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A high performance tool to identify orthologs and paralogs across genomes.
📈SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.
R package for generating Rmarkdown based hands-on HTML worksheets utilized in Barry's Bioinformatics classes at UCSD
Multiscale embedded gene co-expression network analysis
A curated list of nextflow based pipelines
Python package with helper tools for the nf-core community.
❗ This is a read-only mirror of the CRAN R package repository. msaR — Multiple Sequence Alignment for R Shiny
Phinch is a data visualization framework aimed at promoting novel explorations of large biological datasets (microbiomes, metagenomes, etc.). Features include support for HDF5 and JSON BIOM files, …
A JBrowse plugin to view multiple alignment format (MAF) files
shujianbu / Phinch
Forked from PitchInteractiveInc/PhinchPhinch is an open-source framework for visualizing biological data, funded by a grant from the Alfred P. Sloan foundation. This project represents an interdisciplinary collaboration between Pitch I…
De novo assembler for single molecule sequencing reads using repeat graphs
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
An R package for common supervised machine learning metrics.
Graph and network visualization using tabular data in R
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..