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IUSM-connectivity-pipeline

Contributors:

  • Evgeny Chumin, Indiana University School of Medicine, 2018
  • John West, Indiana University School of Medicine, 2018
  • Zikai Lin, Indiana University School of Medicine, 2018
  • Mario Dzemidzic, Indiana University School of Medicine, 2018
  • Joaquin Goni, Purdue University, 2018
  • Enrico Amico, Purdue University, 2018

Description:

Executes pre-processing of anatomical, functional, and diffusion Magnetic Resonance Imaging data.

Requirements:

This code has been developed to operate with the following software:

Usage:

Located within the 'template_batch_files' subdirectory are two matlab script files:

  • 'batch_setup.m'
  • 'system_and_sample_setup_local.m'

These files must be modified to contain approporiate paths for your software and data. They also contain extensive documentation on usage, directory structure set-up, software requirements, etc... We recommend that these files are copied to a separate project directory, where they can be easily associated with your data.

Once modified, the 'run_connectivity_pipeline.m' function can be ran. Through the file selection user interface, select your modified files one at a time, after which processing will begin.

Pertinent References:

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