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updated vignette
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isglobal-brge committed Apr 26, 2021
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7 changes: 1 addition & 6 deletions vignettes/methylclock.Rmd
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Expand Up @@ -420,11 +420,6 @@ gse109446 <- dd[[1]]
```


<!-- ```{r get_gse8586_ok, echo=FALSE} -->
<!-- load(file.path(ff, "data/GSE109446.Rdata")) -->
<!-- ``` -->



```{r age_gse109446, warning=TRUE}
controls <- pData(gse109446)$`diagnosis:ch1`=="control"
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```
The results are the same as those described in the additional file 7 of @knight2016epigenetic (link [here](https://static-content.springer.com/esm/art%3A10.1186%2Fs13059-016-1068-z/MediaObjects/13059_2016_1068_MOESM7_ESM.docx))

Let us continue by illustrating how to compute GA of real examples. The PROGRESS cohort data is available in the additional file 8 of @knight2016epigenetic. It is availabel at `methylclock` as a `tibble`:
Let us continue by illustrating how to compute GA of real examples. The PROGRESS cohort data is available in the additional file 8 of @knight2016epigenetic. It is available at `methylclock` as a `tibble`:

```{r get_progress}
progress_data
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1,318 changes: 1,318 additions & 0 deletions vignettes/methylclock.html

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