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  • eviann Public

    eukaryotic annotation pipeline

    C++ 4 1 GNU General Public License v3.0 Updated Jan 23, 2025

  • EviAnn_release Public

    This is the standalone version of the EviAnn pipeline

    M4 24 1 GNU General Public License v3.0 Updated Jan 15, 2025

  • masurca Public

    bioinformatics genome assembly masurca
    M4 248 35 GNU General Public License v3.0 Updated Dec 20, 2024

  • yahs Public

    Forked from sanger-tol/yahs

    Yet another Hi-C scaffolding tool

    C MIT License Updated Nov 8, 2024

  • NIFFLR Public

    Forked from alguoo314/NIFFLR
    Python GNU General Public License v3.0 Updated Oct 30, 2024

  • PacBio Public

    C++ Other Updated Oct 28, 2024

  • T2T-Browser Public

    Forked from marbl/T2T-Browser

    Genome browser hub for the T2T genomes and resources

    HTML Updated Sep 30, 2024

  • WheresWalker Public

    Perl 3 Updated Sep 10, 2024

  • JASPER_release Public

    This is integrated version of JASPER polisher

    M4 1 1 GNU General Public License v3.0 Updated Jun 27, 2024

  • SuperReads Public

    C++ 2 GNU General Public License v3.0 Updated Feb 15, 2024

  • jf_aligner Public

    fast approximate aligner for genomic sequences

    M4 GNU General Public License v3.0 Updated Oct 24, 2023

  • samtools Public

    C MIT License Updated Oct 13, 2023

  • bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell MIT License Updated May 1, 2023

  • Jellyfish Public

    Forked from gmarcais/Jellyfish

    A fast multi-threaded k-mer counter

    C++ 1 GNU General Public License v3.0 Updated Mar 17, 2023

  • wgs-8 Public

    C 1 GNU General Public License v2.0 Updated Apr 29, 2022

  • ReBuild Public

    C++ GNU General Public License v3.0 Updated Mar 28, 2022

  • mer_polish Public

    Forked from alguoo314/JASPER

    fall 2021

    C++ GNU General Public License v3.0 Updated Dec 16, 2021

  • SOAPdenovo2 Public

    C 1 2 GNU General Public License v3.0 Updated Jun 4, 2021

  • prepare Public

    C Updated Jun 4, 2021

  • freebayes Public

    Forked from freebayes/freebayes

    Bayesian haplotype-based genetic polymorphism discovery and genotyping.

    C++ MIT License Updated Oct 22, 2020

  • Assembly Public

    Forked from AshkenaziGenome/Assembly

    This repository contains the reference genome assembly Ash1, built from data collected from an Ashkenazi individual.

    Updated Oct 9, 2020

  • Flye Public

    Forked from mikolmogorov/Flye

    Fast and accurate de novo assembler for single molecule sequencing reads

    C++ Other Updated Oct 2, 2020

  • contributor_covenant Public

    Forked from EthicalSource/contributor_covenant

    Pledge your respect and appreciation for contributors of all kinds to your open source project.

    CSS Other Updated Jul 14, 2020

  • SuperReads_RNA Public

    M4 GNU General Public License v3.0 Updated Oct 15, 2019

  • xbmc Public

    Forked from xbmc/xbmc

    Kodi is an award-winning free and open source home theater/media center software and entertainment hub for digital media. With its beautiful interface and powerful skinning engine, it's available f…

    C++ Other Updated Apr 30, 2019

  • project_stub Public

    empty project for automake setup

    C++ GNU General Public License v3.0 Updated Mar 5, 2019

  • ufasta Public

    Forked from gmarcais/ufasta

    Utility to manipulate fasta files

    C++ Updated Jan 31, 2019

  • SuperReadsR Public

    super-reads for RNAseq data

    C++ GNU General Public License v3.0 Updated Jan 12, 2019

  • Quorum Public

    Forked from gmarcais/Quorum

    QUality Optimized Reads from the University of Maryland

    C++ GNU General Public License v3.0 Updated Feb 12, 2018

  • wgs Public

    C GNU General Public License v2.0 Updated Jan 13, 2018