extractGraph.m
Constructs adjacency matrices from the fMRI ROI time-series (extracted using DPARSFA toolbox)
and
runs calculations of graph theoretical measures: nodal strength and modularity (using Brain Connectivity Toolbox)
psyMSE.m
Calculates Multiscale Entropy (MSE) for preprocessed images. Uses LOFT's complexity toolbox
PJ - Project-specific scripts:
PJ_reboot1_EuclD.m - MATLAB script to calculate Euclidean distance between fMRI activation maps estimated with *estimate_motcorr.m
PJ_rebootI_freesurferBL.tcsh - REBOOT-I: Cross-sectional preprocessing of the baseline structural scans in Freesurfer (v5.3.0)
PJ_reboot1_nBack_estimate.m - SPM12 Batch for Design/Contrast specification and estimation batch for "N-back" task from REBOOT-I
PJ_reboot1_reason_estimate.m - SPM12 Batch for Design/Contrast specification and estimation batch for "Reasoning" task from REBOOT-I