Correct typos and comments

alexandregilardet · Sep 11, 2020 · e5222cd · e5222cd
1 parent 35dab34
commit e5222cd
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Showing 2 changed files with 10 additions and 10 deletions.
diff --git a/sqlite_herring_v1.py b/sqlite_herring_v1.py
@@ -88,12 +88,12 @@
 
 
 def check_table_exists(tbl):
-    """Check wether tbl already exists from creation of database, otherwise it would create
+    """Check whether table tbl already exists from creation of database, otherwise it would create
     an additional one from the csv indexes"""
     c.execute(
         "SELECT name FROM sqlite_master WHERE type='table'"
-    )  # print all tables' names
-    names = c.fetchall()
+    )  # select all tables' names
+    names = c.fetchall()  # put all these tables' names into a variable
     print(f"Tables in the database are {names}")
     if (tbl,) in names:
         pass

diff --git a/sqlite_salmon_v1.py b/sqlite_salmon_v1.py
@@ -13,8 +13,8 @@
     c.executescript(
         """DROP TABLE IF EXISTS Samples;
     DROP TABLE IF EXISTS Genotypes;
-    DROP TABLE IF EXISTS Snp_list;
-    DROP TABLE IF EXISTS Snp_pos;
+    DROP TABLE IF EXISTS SNP_annotations;
+    DROP TABLE IF EXISTS SNP_position;
     DROP TABLE IF EXISTS Rivers;
 
     CREATE TABLE Samples(
@@ -130,13 +130,13 @@ def get_gt_csv(file):
     "/mnt/c/Users/alexa/Matis/SQL/data/salmon_sql_data/rivers/rivers_to_import_sql.csv",
     "Rivers",
 )
-load_data(
-    "/mnt/c/Users/alexa/Matis/SQL/data/salmon_sql_data/snp_list/SsaTrack_Island_1-8_SNPlist_modified_sql_import.csv",
-    "Snp_list",
-)
+# load_data(
+# "/mnt/c/Users/alexa/Matis/SQL/data/salmon_sql_data/snp_list/SsaTrack_Island_1-8_SNPlist_modified_sql_import.csv",
+# "Snp_list",
+# )
 load_data(
     "/mnt/c/Users/alexa/Matis/SQL/data/salmon_sql_data/snp_pos/Track_SNP_Pos.csv",
-    "Snp_pos",
+    "SNP_position",
 )
 load_data(
     "/mnt/c/Users/alexa/Matis/SQL/data/salmon_sql_data/calls_mod/SsaTrack_Island_1-8.calls_mod.csv",