Stars
App to bypass censorship on Android
GoodbyeDPI — Deep Packet Inspection circumvention utility (for Windows)
An easy-to-use, flexible website template for labs.
Anses - tools for download Salmonella genomes and apply quality filters
⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
An updated pipeline for pangenome investigation
PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
Here you can find all tutorials and materials for the GGBC python for biologists course
Accelerated BLAST compatible local sequence aligner.
MLVA In Silico Typing Resource for Salmonella Strains
Powerful and extensible proxy server with anti-censorship functionality
Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
an interactive viewer for populations of bacterial genomes linked by a phylogeny
An analysis and visualization platform for 'omics data
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output inc…
snipit: summarise snps relative to your reference sequence
Estimate heterozygosity or mixture level of a bacterial WGS sample
List of computational resources for analyzing microbial sequencing data.
Various scripts for efficient processing of 10k Salmonella genomes
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
stemicha / webinars
Forked from rstudio/webinarsCode and slides for RStudio webinars
A tool for the identification of coincident (associating and dissociating) genes in pangenomes.