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Commits on Dec 26, 2021

• r1121: change bw_long to bw if bw is longer

  Show description for e25aa5e
  lh3

  committed
  e25aa5e

Commits on Dec 24, 2021

• r1118: use -r1k,100k for asm* modes

  lh3

  committed
  d3a89d3

Commits on Oct 11, 2021

• r1110: default --cap-kalloc=1g; test more inv

  Show description for ac33463
  lh3

  committed
  ac33463

Commits on Oct 5, 2021

• r1109: disable chain_skip_scale by default

  Show description for 546623d
  lh3

  committed
  546623d

Commits on Oct 1, 2021

• added --chain-skip-scale

  lh3

  committed
  aefa2c0

Commits on Aug 15, 2021

• r1105: avoid long running time occasionally (lh3#771)

  Show description for 05a8a45
  lh3

  committed
  05a8a45

Commits on Jul 19, 2021

• dev-r1079: per-read error rate

  Show description for 161ae7f
  lh3

  committed
  161ae7f

Commits on Jul 18, 2021

• dev-r1078: decoupling ranking penalty

  lh3

  committed
  8a6edab

Commits on Jul 16, 2021

• Merge branch 'master' into utec

  lh3

  committed
  b046052

Commits on May 27, 2021

• Release minimap2-2.20 (r1061)

  lh3

  committed
  15471bd

• r1060: safer ways to use -rNUM1,NUM2

  lh3

  committed
  ca19463

Commits on May 24, 2021

• r1052: default -g to 5k

  lh3

  committed
  41d7ccb

• r1051: added two internal parameters

  Show description for 34a4119
  lh3

  committed
  34a4119

• r1049: removed the long-join heuristics

  lh3

  committed
  3797287

• r1048: rescue long gaps

  lh3

  committed
  4f91558

Commits on May 4, 2021

• r1034: changed multiple defaults; updated manpage

  lh3

  committed
  6c96078

Commits on May 3, 2021

• support RMQ

  lh3

  committed
  bbb4f97

Commits on May 1, 2021

• r1028: backport minigraph -U

  lh3

  committed
  0f5608c

• r1027: renamed hifi to map-hifi; changed default

  lh3

  committed
  e8823a3

• r1026: fixed bugs in seed sampling add hifi

  lh3

  committed
  7edeec6

Commits on Apr 30, 2021

• r1025: seed rescuring

  lh3

  committed
  feb92d3

Commits on Aug 21, 2020

• added --mask-len for lh3#659

  lh3

  committed
  f995f55

Commits on Apr 21, 2020

• r985: optionally report cs/cg on the query strand

  Show description for da7109f
  lh3

  committed
  da7109f

Commits on Jan 21, 2020

• r973: fixed compiling errors caused

  lh3

  committed
  a7a01fe

• support ALT mapping

  lh3

  committed
  eb3ed69

Commits on Jan 18, 2020

• r965: added --chain-gap-scale for lh3#540

  lh3

  committed
  040f741

Commits on May 4, 2019

• r940: added the splice:hq preset

  Show description for 6762368
  lh3

  committed
  6762368

Commits on Apr 28, 2019

• implemented in exts; testing is the next

  lh3

  committed
  be171aa

Commits on Feb 27, 2019

• r917: added --max-chain-iter to avoid worst case

  Show description for d431dc0
  lh3

  committed
  d431dc0

Commits on Nov 6, 2018

• r882: guard against -E0 (lh3#263)

  lh3

  committed
  5e55e39

Commits on Oct 4, 2018

• r849: option -P doesn't work

  Show description for 170863e
  lh3

  committed
  170863e

Commits on Jul 25, 2018

• r819: mappy to support cs/MD

  lh3

  committed
  ff9917a

Commits on Jul 5, 2018

• --splice implied when searching for splicing sites on single strand

  

  Piezoid

  authored and

  lh3

  committed
  6908dc5

Commits on Jun 20, 2018

• r295: use -r2000 for ava-ont, NOT for ava-pb

  lh3

  committed
  2584a41

Commits on Jun 19, 2018

• r792: fixed -Wextra warnings and resolved lh3#184

  lh3

  committed
  7e6e8ca

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