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LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structural information to predict protein function.
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Ultra-deep search for novel viruses
Viroid Nominator (VNom): reference free tool for nominating viroid-like de novo assembled contigs
RAxML Next Generation: faster, easier-to-use and more flexible
Python code for processing RBR CTD data
A tool for identifying phylogenetic marker genes in Nucleocytoviricota (giant viruses) and generating concatenated alignments.
Accurate and rapid RiboRNA sequences Detector based on deep learning
Exploring the "dusk matter" of the RNA virosphere
customizable pipeline to identify viral sequences from (meta)genomic data
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Phylogenetic intersection analysis (PIA) from the Allaby lab, University of Warwick: doi.org/10.3389/fevo.2020.00084
Massively parallel phylogenetic placement of genetic sequences