LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structural information to predict protein function.

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

Virus identification from metagenomic data

Ultra-deep search for novel viruses

Viroid Nominator (VNom): reference free tool for nominating viroid-like de novo assembled contigs

Prodigal Gene Prediction Software

RAxML Next Generation: faster, easier-to-use and more flexible

Python code for processing RBR CTD data

A tool for identifying phylogenetic marker genes in Nucleocytoviricota (giant viruses) and generating concatenated alignments.

Utility functions for Soothsayer

Accurate and rapid RiboRNA sequences Detector based on deep learning

SPAdes Genome Assembler

Exploring the "dusk matter" of the RNA virosphere

customizable pipeline to identify viral sequences from (meta)genomic data

A versatile pairwise aligner for genomic and spliced nucleotide sequences

new codebase of the PaPaRa algorithm

Phylogenetic intersection analysis (PIA) from the Allaby lab, University of Warwick: doi.org/10.3389/fevo.2020.00084

Massively parallel phylogenetic placement of genetic sequences

Detection of NCLDV signatures in 'omic data