identifying cell migration by 3D vessel segmentation

This repository contains code for implementing vessel segmentation method initially described in the following paper:

(manuscript title? and authors?)

(is still working on this repository, a new package will be ready soon...)

Overview

Segmenting vessel under various fluid dynamics

Installation

Prerequisites

This code is written and tested in Python 3.6.5

The required Python libaries are:

• NumPy
• SciPy
• Matplotlib
• AlvaMachinery

Getting started

clone git https://github.com/alvason/identifying_cell_migration_by_vessel_segmentation.git

Examples

Demo 1 of vessel3D code in Jupyter-notebook

Demo 2 of vessel3D code in Jupyter-notebook

Contact and more information

This repository is maintained by @alvason.