RNA-seq workflow using STAR and DESeq2

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of…

Making art with R

This is a repository of the codes used in the Tomofuji et al (reconstruction of the personal information from meta genome shotgun sequencing data).

Dot-and-Whisker Plots of Regression Results

A tidy unified interface to models

Ggplot picture previewer

Colors for all (R package)

1-code framework: docs, C-library, and tools

Ultrafast functional classification of microbial reads

Visualization of Colocalization Between eQTL and GWAS Data

Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

Library for clinical NLP with spaCy.

MedTagger is a light weight clinical NLP system built upon Apache UIMA.

Workshop materials for creating the Center City Sips District 2022 interactive map

Official documents of the Open Bioinformatics Foundation

A user-friendly, highly customizable R package for building horizon plots in ggplot2

R package for the analysis of massive SNP arrays.

Causal Inference with R

DNAnexus platform client libraries

A backend for StatsD to emit stats to mongodb.