circos modified

andrese52 · Aug 15, 2018 · 4cd42b1 · 4cd42b1
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diff --git a/README.md b/README.md
@@ -7,4 +7,10 @@ This repository contains all the [scripts](/scripts) that allowed to obtain all
 There are multiple steps associated with the design of e-probes. In this case, all the methodology is explained in our manuscript.
 
 # E-probe coordinates
-Retrieving coordinates from different aflatoxin gene clusters. First we need to retrieve all the aflatoxin gene clusters available.
+Retrieving coordinates from different aflatoxin gene clusters. First we need to retrieve all the aflatoxin gene clusters available on NCBI.
+First move to the `results` folder and run the following command
+
+```bash
+cd results
+bash ../scripts/run_circos.sh ../gene-cluster-IDs.txt
+```
diff --git a/scripts/run_circos.sh b/scripts/run_circos.sh
@@ -2,5 +2,5 @@
 
 #Download all the sequences required
 
-perl scripts/get_genbank_batch.pl $1
-perl scripts/genbank2fasta.pl sequences.gbk
+perl get_genbank_batch.pl $1
+perl genbank2fasta.pl sequences.gbk