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Update Prerequisites.Rmd
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AndrewLJackson committed Jan 25, 2022
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Expand Up @@ -10,12 +10,14 @@ In preparation for the course please install the following, preferably in the be

Install the following using the corresponding links and *make sure you have the latest versions installed*:

- R: [http://www.r-project.org](http://www.r-project.org): current version is v4.0.5 and we will assume this version throughout this course. If you want to run an older version or a custom setup then we may not be able to help with compatability issues that may arise.
- R: [http://www.r-project.org](http://www.r-project.org): current version is v4.1.2 and we will assume this version throughout this course. If you want to run an older version or a custom setup then we may not be able to help with compatability issues that may arise.

- Rstudio (optional but recommended): [https://www.rstudio.com](https://www.rstudio.com) - current version 1.4.1106
- Rstudio (optional but recommended): [https://www.rstudio.com](https://www.rstudio.com) - current version 2021.09.2

- JAGS: http://sourceforge.net/projects/mcmc-jags/files/ **_This step is really important and easy to skip over. JAGS is required, and is not installed as part of the R package rjags which is just a set of functions for R to interact with JAGS._**

- Rtools for windows. If you are a windows user, it is likely you will need to install this suite of developer tools to install some custom packages https://cran.r-project.org/bin/windows/Rtools/rtools40.html

### Step 2

Now install all the packages required for the course by entering the following code in to R
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#### Windows issues

- If you are on Windows and you get an error about not having Rtools please install Rtools from the link it provides you in the error message
- If you are on Windows and you get an error about not having Rtools please install Rtools from the link it provides you in the error message or from here https://cran.r-project.org/bin/windows/Rtools/rtools40.html
- If you are trying to install Rtools with R 3.5.0 and are getting an error message about incompatibility of Rtools, run the command:
```{r, eval=FALSE}
library(devtools)
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