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dominikstanojevic

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Commits on Apr 14, 2024

• Update README.md

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Commits on Dec 21, 2023

• Merge pull request lbcb-sci#8 from BakicSara/main

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Commits on Sep 22, 2023

• Merge branch 'main' of https://github.com/lbcb-sci/rockfish into main

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  e41d519

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• Model updates

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Commits on Sep 19, 2023

• Merge pull request lbcb-sci#7 from lbcb-sci/revision2

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Commits on Sep 18, 2023

• Fixes and changes

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• Fixes related to feature extraction and model

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• Removed ThreadBuffer in inference

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Commits on Jul 31, 2023

• Bugfixes regarding the removal of model kmers

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  59017cf

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• Removes current diff features from inference.py

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  417d67a

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Commits on Jul 19, 2023

• Small changes in the model

  dominikstanojevic

  committed
  4f41c3f

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Commits on Jul 18, 2023

• Use vanilla encoder to utilize 'Better Transformer'

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  2c12206

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Commits on Jul 17, 2023

• Removed model k-mers features

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  063dcc0

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Commits on May 10, 2023

• For unknown model kmers now return 0.0 - temporary fix.

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  fe1f12c

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Commits on May 9, 2023

• Merge branch 'revision' of https://github.com/lbcb-sci/rockfish into revision

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  a5ce892

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• Modified rf_inference

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Commits on May 8, 2023

• Fix

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  1125f16

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Commits on Apr 24, 2023

• Modified model

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  2e6371c

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Commits on Apr 2, 2023

• Bugfix in inference

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  committed
  b6dead1

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• Updated model code to handle mean diffs.

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  3c9f868

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Commits on Mar 27, 2023

• Bugfix related to starting event means

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  edae76d

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Commits on Mar 20, 2023

• Fix for data length

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  committed
  8032321

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• Handle empty events

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  committed
  0dd986a

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• Some bugfixes regarding windows

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  092dab0

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• Fixed load_model_kmers returning NoneType

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  4d196ce

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• Fixed range creation

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  0cf5434

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• Fixed arguments to extract_features

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  6f9723a

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• files variable renamed to fast5_files

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  committed
  7e10140

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• Merge branch 'revision' of https://github.com/lbcb-sci/rockfish into revision

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  committed
  11eac51

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• Added model kmers as features

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  e0e15dd

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• Revision update

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  53b4d16

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Commits on Jan 18, 2023

• Added number of classes for accuracy losses

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  e0c07a9

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• Modifying code for revision

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Commits on Nov 9, 2022

• Merge pull request lbcb-sci#6 from lbcb-sci/submission

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• Fixes

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