Skip to content

Commit

Permalink
Actually use new docker
Browse files Browse the repository at this point in the history
  • Loading branch information
aofarrel committed Dec 18, 2024
1 parent d9c20a7 commit 8b9aeea
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion myco_sra.wdl
Original file line number Diff line number Diff line change
Expand Up @@ -88,7 +88,7 @@ workflow myco {
scatter(pulled_fastq in pulled_fastqs) {
call clckwrk_combonation.clean_and_decontam_and_check as fastp_decontam_check {
input:
docker_image = if decontam_use_CDC_varpipe_ref then "ashedpotatoes/clockwork-plus:v0.11.3.11-CDC" else "ashedpotatoes/clockwork-plus:v0.11.3.11-CRyPTIC",
docker_image = if decontam_use_CDC_varpipe_ref then "clockwork-plus:v0.12.5.2-CDC" else "clockwork-plus:v0.12.5.2-CRyPTIC",
unsorted_sam = true,
reads_files = pulled_fastq,
fastp_clean_avg_qual = clean_average_q_score,
Expand Down

0 comments on commit 8b9aeea

Please sign in to comment.