Output decontam reports for myco_raw

aofarrel · Aug 22, 2024 · edcc582 · edcc582
1 parent f285c45
commit edcc582
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/myco_raw.wdl b/myco_raw.wdl
@@ -428,6 +428,7 @@ workflow myco {
 		Array[File]  vcfs  = minos_vcfs
 
 		# metadata
+		Array[File?] decontam_reports          = decontam_each_sample.counts_out_tsv
 		Array[File?] covstats_reports          = covstats.covstatsOutfile
 		Array[File?] diff_reports              = real_reports
 		Array[File?] tbprof_bam_jsons          = profile_bam.tbprofiler_json