GitHub - archienorman11/nlp-event-extraction: Pathway databases such as Kegg, EcoCyc and MetaCyc store structured representations of known biomedical processes and make the scientist’s life easier, but are expensive to create and suffer from low coverage. This has led to major efforts in the automatic construction of such knowledge bases from natural language text. In particular, since 2009 a bi-yearly BioNLP Shared Task on “biomedical event extraction” has been held. In this task sentences are mapped to structured representations of the biomedical events they describe.

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Pathway databases such as Kegg, EcoCyc and MetaCyc store structured representations of known biomedical processes and make the scientist’s life easier, but are expensive to create and suffer from low coverage. This has led to major efforts in the automatic construction of such knowledge bases from natural language text. In particular, since 2009…

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code		code
data-analysis-flow		data-analysis-flow
predictions		predictions
report		report
README.md		README.md

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Statistical Natural Language Processing - Group Assignment 1 - Event Extraction

Repository contents:

Code folder consisting of the main source code in Scala
Data Analysis Flow consisting of screenshots from the Data Analysis process
Predictions folder consisting of prediction made
Report folder consisting of the final report in PDF format

Assignment Brief

The tasks to be completed in this assignment were:

Implementation of Perceptron Algorithm
Implementation of Average Perceptron
Feature Engineering and Evaluation
Implementation and evaluation for Problem 4
Problem 6: Error Analysis
Joint Conditional Likelihood

Instructions

To run the source code, you have to manually set up a project in an IDE that supports Scala. For this assignment, IntelliJ IDEA IDE was used.

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Pathway databases such as Kegg, EcoCyc and MetaCyc store structured representations of known biomedical processes and make the scientist’s life easier, but are expensive to create and suffer from low coverage. This has led to major efforts in the automatic construction of such knowledge bases from natural language text. In particular, since 2009…

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