Merge pull request mzmine#589 from robinschmid/patch_batch_wiz

Patch batch wizard remove selected libraries
arteevraina · Mar 9, 2022 · f6df3ae · f6df3ae
2 parents 46b7b5d + 791d36d
commit f6df3ae
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/src/main/java/io/github/mzmine/modules/tools/batchwizard/BatchWizardController.java b/src/main/java/io/github/mzmine/modules/tools/batchwizard/BatchWizardController.java
@@ -78,6 +78,7 @@
 import io.github.mzmine.modules.io.export_features_sirius.SiriusExportParameters;
 import io.github.mzmine.modules.io.import_rawdata_all.AllSpectralDataImportModule;
 import io.github.mzmine.modules.io.import_rawdata_all.AllSpectralDataImportParameters;
+import io.github.mzmine.modules.io.import_spectral_library.SpectralLibraryImportParameters;
 import io.github.mzmine.modules.io.spectraldbsubmit.formats.GnpsValues.Polarity;
 import io.github.mzmine.modules.tools.batchwizard.defaults.DefaultLcParameters;
 import io.github.mzmine.modules.tools.batchwizard.defaults.DefaultMsParameters;
@@ -429,6 +430,8 @@ private MZmineProcessingStep<MZmineProcessingModule> makeImportTask(FileNamesPar
         .getModuleParameters(AllSpectralDataImportModule.class).cloneParameterSet();
     param.getParameter(AllSpectralDataImportParameters.advancedImport).setValue(false);
     param.getParameter(AllSpectralDataImportParameters.fileNames).setValue(files.getValue());
+    // for now import no libraries
+    param.getParameter(SpectralLibraryImportParameters.dataBaseFiles).setValue(new File[0]);
 
     return new MZmineProcessingStepImpl<>(
         MZmineCore.getModuleInstance(AllSpectralDataImportModule.class), param);