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  • nixos Public

    My NixOS and Home Manager configuration

    Nix GNU General Public License v3.0 Updated Feb 2, 2025
  • mia Public

    Forked from microbiome/mia

    Microbiome analysis

    R Artistic License 2.0 Updated Jan 21, 2025
  • My Python (micro)mamba environments

    Updated Jan 17, 2025
  • MultiQC Public

    Forked from MultiQC/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    JavaScript GNU General Public License v3.0 Updated Jan 16, 2025
  • Jupyter Notebook 2 GNU General Public License v3.0 Updated Dec 17, 2024
  • Dev environments for numerous languages based on Nix flakes [maintainer=@lucperkins]

    Nix Updated Dec 10, 2024
  • Ansible repository to bootstrap Caddy with Crowdsec support

    Jinja MIT License Updated Dec 7, 2024
  • Miscellaneous scripts I use to run my self-hosted services

    Shell Updated Dec 7, 2024
  • Integrated Machine Learning for Multi-omics Classification and Prediction

    HTML MIT License Updated Nov 27, 2024
  • OMA Public

    Forked from microbiome/OMA

    Orchestrating Microbiome Analysis

    TeX Updated Nov 22, 2024
  • R interface for HoloFood resource

    R Artistic License 2.0 Updated Nov 8, 2024
  • Nix expressions for VSCode and OpenVSX extensions [maintainers: @deemp, @AmeerTaweel]

    Haskell MIT License Updated Oct 23, 2024
  • miaTime Public

    Forked from microbiome/miaTime

    Microbiome time series analysis

    R Artistic License 2.0 Updated Oct 18, 2024
  • SpiecEasi Public

    Forked from zdk123/SpiecEasi

    Sparse InversE Covariance estimation for Ecological Association and Statistical Inference

    R GNU General Public License v3.0 Updated Oct 15, 2024
  • nixpkgs Public

    Forked from NixOS/nixpkgs

    Nix Packages collection & NixOS

    Nix MIT License Updated Oct 14, 2024
  • scater Public

    Forked from alanocallaghan/scater

    Clone of the Bioconductor repository for the scater package.

    R Updated Oct 14, 2024
  • miaViz Public

    Forked from microbiome/miaViz

    Microbiome Analysis Plotting and Visualization

    R Artistic License 2.0 Updated Oct 14, 2024
  • podlet Public

    Forked from containers/podlet

    Generate Podman Quadlet files from a Podman command, compose file, or existing object

    Rust Mozilla Public License 2.0 Updated Sep 27, 2024
  • NetCoMi Public

    Forked from stefpeschel/NetCoMi

    Network construction, analysis, and comparison for microbial compositional data

    R GNU General Public License v3.0 Updated Sep 17, 2024
  • SPRING Public

    Forked from GraceYoon/SPRING

    Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data

    R Updated Sep 17, 2024
  • outreach Public

    Forked from microbiome/outreach

    Publications, slides, and posters

    HTML Updated Sep 17, 2024
  • mixedCCA Public

    Forked from irinagain/mixedCCA

    R package for sparse canonical correlation analysis with mixed data types (continuous, binary, zero-truncated)

    R Updated Sep 15, 2024
  • Supporting Shadow under NixOS, fork of the @NicolasGuilloux work

    Nix The Unlicense Updated Sep 13, 2024
  • home-manager Public archive

    My Nix Home Manager configuration

    Nix Updated Aug 30, 2024
  • dotfiles Public archive

    Updated Aug 16, 2024
  • My Packer templates for Proxmox

    HCL Updated May 23, 2024
  • oma-cachix Public

    Nix cache for Orchestrating Microbiome Analysis book

    Nix Updated Apr 26, 2024
  • nix-quarto Public

    TeX Updated Apr 14, 2024
  • Podman Quadlets I use on local computers

    Updated Apr 14, 2024
  • locally hosted web application that allows you to perform various operations on PDF files

    Java GNU General Public License v3.0 Updated Mar 28, 2024