MICCAI 2019 Open Source Papers

Part I, LNCS Volume 11764 Optical Imaging; Endoscopy; Microscopy

Title	First Author	PDF	Code
A Deep Reinforcement Learning Framework for Frame-by-Frame Plaque Tracking on Intravascular Optical Coherence Tomography Image	Gongning Luo	LNCS	Code
Boundary and Entropy-Driven Adversarial Learning for Fundus Image Segmentation	Shujun Wang	LNCS	Code
Probabilistic Atlases to Enforce Topological Constraints	Udaranga Wickramasinghe	LNCS	Code
Synapse-Aware Skeleton Generation for Neural Circuits	Brian Matejek	LNCS	Code
Seeing Under the Cover: A Physics Guided Learning Approach for In-bed Pose Estimation	Shuangjun Liu	LNCS	Code
Ki-GAN: Knowledge Infusion Generative Adversarial Network for Photoacoustic Image Reconstruction In Vivo	Hengrong Lan	LNCS	Code
Triple ANet: Adaptive Abnormal-aware Attention Network for WCE Image Classification	Xiaoqing Guo	LNCS	Code
Selective Feature Aggregation Network with Area-Boundary Constraints for Polyp Segmentation	Yuqi Fang	LNCS	Code
Multi-scale Cell Instance Segmentation with Keypoint Graph Based Bounding Boxes	Jingru Yi	LNCS	Code
Improving Nuclei/Gland Instance Segmentation in Histopathology Images by Full Resolution Neural Network and Spatial Constrained Loss	Hui Qu	LNCS	Code
ET-Net: A Generic Edge-aTtention Guidance Network for Medical Image Segmentation	Zhijie Zhang	LNCS	Code
Instance Segmentation of Biomedical Images with an Object-Aware Embedding Learned with Local Constraints	Long Chen	LNCS	Code
Synthetic Patches, Real Images: Screening for Centrosome Aberrations in EM Images of Human Cancer Cells	Artem Lukoyanov	LNCS	Code
Weakly Supervised Cell Instance Segmentation by Propagating from Detection Response	Kazuya Nishimura	LNCS	Code
Robust Non-negative Tensor Factorization, Diffeomorphic Motion Correction, and Functional Statistics to Understand Fixation in Fluorescence Microscopy	Neel Dey	LNCS	Code

Part II, LNCS Volume 11765 Image Segmentation; Image Registration; Cardiovascular Imaging; Growth, Development, Atrophy, and Progression

Title	First Author	PDF	Code
‘Project & Excite’ Modules for Segmentation of Volumetric Medical Scans	Anne-Marie Rickmann	LNCS	Code
Assessing Reliability and Challenges of Uncertainty Estimations for Medical Image Segmentation	Alain Jungo	LNCS	Code
Extreme Points Derived Confidence Map as a Cue for Class-Agnostic Interactive Segmentation Using Deep Neural Network	Shadab Khan	LNCS	Code
Instance Segmentation from Volumetric Biomedical Images Without Voxel-Wise Labeling	Meng Dong	LNCS	Code
PHiSeg: Capturing Uncertainty in Medical Image Segmentation	Christian F. Baumgartner	LNCS	Code
Automatic Segmentation of Vestibular Schwannoma from T2-Weighted MRI by Deep Spatial Attention with Hardness-Weighted Loss	Guotai Wang	LNCS	Code
Learning Shape Representation on Sparse Point Clouds for Volumetric Image Segmentation	Fabian Balsiger	LNCS	Code
3D U2-Net: A 3D Universal U-Net for Multi-domain Medical Image Segmentation	Chao Huang	LNCS	Code
Constrained Domain Adaptation for Segmentation	Mathilde Bateson	LNCS	Code
Curriculum Semi-supervised Segmentation	Hoel Kervadec	LNCS	Code
Uncertainty-Aware Self-ensembling Model for Semi-supervised 3D Left Atrium Segmentation	Lequan Yu	LNCS	Code
Deep Probabilistic Modeling of Glioma Growth	Jens Petersen	LNCS	Code
Variational AutoEncoder for Regression: Application to Brain Aging Analysis	Qingyu Zhao	LNCS	Code
Disease Knowledge Transfer Across Neurodegenerative Diseases	R˘azvan V. Marinescu	LNCS	Code
One Network to Segment Them All: A General, Lightweight System for Accurate 3D Medical Image Segmentation	Mathias Perslev	PDF	TF

Part III, LNCS Volume 11766 Neuroimage Reconstruction and Synthesis; Neuroimage Segmentation; Diffusion-Weighted Magnetic Resonance Imaging; Functional Neuroimaging (fMRI); Miscellaneous Neuroimaging

Title	First Author	PDF	Code
Model-Based Convolutional De-Aliasing Network Learning for Parallel MR Imaging	Yanxia Chen	LNCS	Code
Generation of 3D Brain MRI Using Auto-Encoding Generative Adversarial Networks	Gihyun Kwon	LNCS	Code
Predicting the Evolution of White Matter Hyperintensities in Brain MRI Using Generative Adversarial Networks and Irregularity Map	Muhammad Febrian Rachmadi	LNCS	Code
3D Dilated Multi-fiber Network for Real-Time Brain Tumor Segmentation in MRI	Chen Chen	LNCS	Code
Refined Segmentation R-CNN: A Two-Stage Convolutional Neural Network for Punctate White Matter Lesion Segmentation in Preterm Infants	Yalong Liu	LNCS	Code
X-Net: Brain Stroke Lesion Segmentation Based on Depthwise Separable Convolution and Long-Range Dependencies	Kehan Qi	LNCS	Code
CLCI-Net: Cross-Level Fusion and Context Inference Networks for Lesion Segmentation of Chronic Stroke	Hao Yang	LNCS	Code
Unsupervised Deep Learning for Bayesian Brain MRI Segmentation	Adrian V. Dalca	LNCS	Code
A Partially Reversible U-Net for Memory-Efficient Volumetric Image Segmentation	Robin Brügger	LNCS	Code
Cortical Surface Parcellation Using Spherical Convolutional Neural Networks	Prasanna Parvathaneni	LNCS	Code
Deep White Matter Analysis: Fast, Consistent Tractography Segmentation Across Populations and dMRI Acquisitions	Fan Zhang	LNCS	Code
DeepTract: A Probabilistic Deep Learning Framework for White Matter Fiber Tractography	Itay Benou	LNCS	Code

Part IV, LNCS Volume 11767 Shape; Prediction; Detection and Localization; Machine Learning; Computer-Aided Diagnosis; Image Reconstruction and Synthesis

Title	First Author	PDF	Code
Multiple Landmark Detection Using Multi-agent Reinforcement Learning	Athanasios Vlontzos	LNCS	Code
Unsupervised Anomaly Localization Using Variational Auto-Encoders	David Zimmerer	LNCS	Code
Multi-stage Prediction Networks for Data Harmonization	Stefano B. Blumberg	LNCS	Code
Bayesian Volumetric Autoregressive Generative Models for Better Semisupervised Learning	Guilherme Pombo	LNCS	Code
Overcoming Data Limitation in Medical Visual Question Answering	Binh D. Nguyen	LNCS	Code
VS-Net: Variable Splitting Network for Accelerated Parallel MRI Reconstruction	Jinming Duan	LNCS	Code
Models Genesis: Generic Autodidactic Models for 3D Medical Image Analysis	Zongwei Zhou	PDF	Keras

Part V, LNCS Volume 11768 Computer-Assisted Interventions; MIC Meets CAI

Title	First Author	PDF	Code
INN: Inflated Neural Networks for IPMN Diagnosis	Rodney LaLonde	LNCS	Code
Generating Large Labeled Data Sets for Laparoscopic Image Processing Tasks Using Unpaired Image-to-Image Translation	Micha Pfeiffer	LNCS	Code
Variational Shape Completion for Virtual Planning of Jaw Reconstructive Surgery	Amir H. Abdi	LNCS	Code
Incorporating Temporal Prior from Motion Flow for Instrument Segmentation in Minimally Invasive Surgery Video	Yueming Jin	LNCS	Code
Hard Frame Detection and Online Mapping for Surgical Phase Recognition	Fangqiu Yi	LNCS	Code
Using 3D Convolutional Neural Networks to Learn Spatiotemporal Features for Automatic Surgical Gesture Recognition in Video	Isabel Funke	LNCS	Code
Matwo-CapsNet: A Multi-label Semantic Segmentation Capsules Network	Savinien Bonheur	LNCS	Code
LumiPath – Towards Real-Time Physically-Based Rendering on Embedded Devices	Laura Fink	LNCS	Code

Part VI, LNCS Volume 11769-TBD Computed Tomography; X-ray Imaging

Title	First Author	PDF	Code
		LNCS	Code
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Any contributations are welcome! Such as arxiv PDF link, new released code and so on.