Make your own quadrille, graph, hex, etc paper! Uses the pgf/TikZ package for LaTeX, which should be part of any modern TeX installation.

The break time reminder app

Lecture Notes on Computational and Mathematical Population Genetics

Volume-regularized NMF

OpenBoard is a cross-platform interactive whiteboard application intended for use in a classroom setting.

Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)

Eigen tools by Nick Patterson and Alkes Price lab

Pure-python library for adding annotations to PDFs

Read-only mirror of https://gitlab.gnome.org/GNOME/dasher

Bioinformatics pipeline for the identification of putative de novo mutation in a wolf pedigree

python interface to bnlearn and other probabilistic graphical model libraries

Infer demographic history with the Moran model

A Python library for phylogenetic scripting, simulation, data processing and manipulation.

Workrave is a program that assists in the recovery and prevention of Repetitive Strain Injury (RSI). The program frequently alerts you to take micro-pauses, rest breaks and restricts you to your da…

BWK awk modified for biological data

A good looking terminal emulator which mimics the old cathode display...

de novo sequence assembler using string graphs

Simple program to cap mapping quality in a given alignment file

Simulate genealogical trees and genomic sequence data using population genetic models

Supplementary files for my book, "Bioinformatics Data Skills"

My dotfiles, with simple install script.

Tools (written in C using htslib) for manipulating next-generation sequencing data

Population genetics notes

A Variant Call Format reader for Python.

C library for high-throughput sequencing data formats

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

The standard library of the D programming language

Modified or extracted from other programs

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html