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CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).

git.io/ciatah_docs

MIT license

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Name		Name	Last commit message	Last commit date
Latest commit History 40 Commits
acknowledgments		acknowledgments
all_docs		all_docs
alldocs		alldocs
api_ciapkg		api_ciapkg
api_example_pipeline		api_example_pipeline
blank		blank
css		css
data		data
dependencies		dependencies
example_data		example_data
fonts		fonts
help_analysis_methods		help_analysis_methods
help_animal_tracking		help_animal_tracking
help_cell_extraction		help_cell_extraction
help_contrast		help_contrast
help_cross_session_alignment		help_cross_session_alignment
help_inscopix		help_inscopix
help_issues		help_issues
help_large_movie_analysis		help_large_movie_analysis
help_manual_cell_sorting		help_manual_cell_sorting
help_motion_correction		help_motion_correction
help_nwb		help_nwb
help_snr		help_snr
help_spatial_filtering		help_spatial_filtering
help_stripe_removal		help_stripe_removal
help_temporal_downsampling		help_temporal_downsampling
img		img
install		install
install2		install2
install_alt		install_alt
install_gui_notes		install_gui_notes
js		js
license		license
notes		notes
organization		organization
pipeline_animal_tracking		pipeline_animal_tracking
pipeline_detailed		pipeline_detailed
pipeline_detailed_all		pipeline_detailed_all
pipeline_detailed_cross_session		pipeline_detailed_cross_session
pipeline_detailed_downsample_raw		pipeline_detailed_downsample_raw
pipeline_detailed_modify_movies		pipeline_detailed_modify_movies
pipeline_detailed_preprocess		pipeline_detailed_preprocess
pipeline_detailed_preprocess_check		pipeline_detailed_preprocess_check
pipeline_detailed_signal_extraction		pipeline_detailed_signal_extraction
pipeline_detailed_signal_extraction_load		pipeline_detailed_signal_extraction_load
pipeline_detailed_signal_extraction_validation		pipeline_detailed_signal_extraction_validation
pipeline_detailed_signal_region_analysis		pipeline_detailed_signal_region_analysis
pipeline_detailed_signal_sorting_manual		pipeline_detailed_signal_sorting_manual
pipeline_detailed_spinal		pipeline_detailed_spinal
pipeline_overview		pipeline_overview
questions		questions
references		references
search		search
vid		vid
404.html		404.html
desktop.ini		desktop.ini
index.html		index.html
search.html		search.html
sitemap.xml		sitemap.xml
sitemap.xml.gz		sitemap.xml.gz