capitalized journal titles in bib

latex/wgd.bbl

@@ -12,14 +12,14 @@ Anders, S., P.~T. Pyl, and W.~Huber, 2015.
 \bibitem[{Arumuganathan and Earle(1991)}]{arumuganathan1991}
 Arumuganathan, K. and E.~Earle, 1991.
 \newblock Nuclear dna content of some important plant species.
-\newblock Plant molecular biology reporter 9:208--218.
+\newblock Plant Molecular Biology Reporter 9:208--218.
 
 \bibitem[{Barker et~al.(2009)Barker, Vogel, and Schranz}]{barker2009}
 Barker, M.~S., H.~Vogel, and M.~E. Schranz, 2009.
 \newblock Paleopolyploidy in the brassicales: analyses of the cleome
   transcriptome elucidate the history of genome duplications in arabidopsis and
   other brassicales.
-\newblock Genome biology and evolution 1:391--399.
+\newblock Genome Biology and Evolution 1:391--399.
 
 \bibitem[{Birchler and Veitia(2012)}]{birchler2012}
 Birchler, J.~A. and R.~A. Veitia, 2012.
@@ -43,20 +43,20 @@ Bolger, A.~M., M.~Lohse, and B.~Usadel, 2014.
 Cannon, S.~B., A.~Mitra, A.~Baumgarten, N.~D. Young, and G.~May, 2004.
 \newblock The roles of segmental and tandem gene duplication in the evolution
   of large gene families in arabidopsis thaliana.
-\newblock BMC plant biology 4:10.
+\newblock BMC Plant Biology 4:10.
 
 \bibitem[{Coate and Doyle(2010)}]{coate2010}
 Coate, J.~E. and J.~J. Doyle, 2010.
 \newblock Quantifying whole transcriptome size, a prerequisite for
   understanding transcriptome evolution across species: an example from a plant
   allopolyploid.
-\newblock Genome biology and evolution 2:534--546.
+\newblock Genome Biology and Evolution 2:534--546.
 
 \bibitem[{Coate and Doyle(2011)}]{coate2011}
 ---{}---{}---, 2011.
 \newblock Divergent evolutionary fates of major photosynthetic gene networks
   following gene and whole genome duplications.
-\newblock Plant signaling \& behavior 6:594--597.
+\newblock Plant Signaling \& Behavior 6:594--597.
 
 \bibitem[{Coate et~al.(2016)Coate, Song, Bombarely, and Doyle}]{coate2016}
 Coate, J.~E., M.~J. Song, A.~Bombarely, and J.~J. Doyle, 2016.
@@ -68,22 +68,22 @@ Coate, J.~E., M.~J. Song, A.~Bombarely, and J.~J. Doyle, 2016.
 Conant, G.~C., J.~A. Birchler, and J.~C. Pires, 2014.
 \newblock Dosage, duplication, and diploidization: clarifying the interplay of
   multiple models for duplicate gene evolution over time.
-\newblock Current opinion in plant biology 19:91--98.
+\newblock Current Opinion in Plant Biology 19:91--98.
 
 \bibitem[{Defoort et~al.(2019)Defoort, Van~de Peer, and
   Carretero-Paulet}]{defoort2019}
 Defoort, J., Y.~Van~de Peer, and L.~Carretero-Paulet, 2019.
 \newblock The evolution of gene duplicates in angiosperms and the impact of
   protein-protein interactions and the mechanism of duplication.
-\newblock Genome biology and evolution .
+\newblock Genome Biology and Evolution .
 
 \bibitem[{Dong et~al.(2019)Dong, Lau, Song, Ierullo, Esteban, Wu, Sivieng,
   Nahal, Gaudinier, Pasha et~al.}]{dong2019}
 Dong, S., V.~Lau, R.~Song, M.~Ierullo, E.~Esteban, Y.~Wu, T.~Sivieng, H.~Nahal,
   A.~Gaudinier, A.~Pasha, et~al., 2019.
 \newblock Proteome-wide, structure-based prediction of protein-protein
   interactions/new molecular interactions viewer.
-\newblock Plant physiology 179:1893--1907.
+\newblock Plant Physiology 179:1893--1907.
 
 \bibitem[{Doyle and Coate(2019)}]{doyle2019}
 Doyle, J.~J. and J.~E. Coate, 2019.
@@ -98,7 +98,7 @@ Edger, P.~P., J.~C. Hall, A.~Harkess, M.~Tang, J.~Coombs, S.~Mohammadin, M.~E.
 \newblock Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of
   the phylogenetic localization of two paleopolyploid events and origin of
   novel chemical defenses.
-\newblock American journal of botany 105:463--469.
+\newblock American Journal of Botany 105:463--469.
 
 \bibitem[{Edger and Pires(2009)}]{edger2009}
 Edger, P.~P. and J.~C. Pires, 2009.
@@ -110,19 +110,19 @@ Edger, P.~P. and J.~C. Pires, 2009.
 Freeling, M., 2009.
 \newblock Bias in plant gene content following different sorts of duplication:
   tandem, whole-genome, segmental, or by transposition.
-\newblock Annual review of plant biology 60:433--453.
+\newblock Annual Review of Plant Biology 60:433--453.
 
 \bibitem[{Grob and Grossniklaus(2017)}]{grob2017}
 Grob, S. and U.~Grossniklaus, 2017.
 \newblock Chromosome conformation capture-based studies reveal novel features
   of plant nuclear architecture.
-\newblock Current opinion in plant biology 36:149--157.
+\newblock Current Opinion in Plant Biology 36:149--157.
 
 \bibitem[{Grob et~al.(2014)Grob, Schmid, and Grossniklaus}]{grob2014}
 Grob, S., M.~W. Schmid, and U.~Grossniklaus, 2014.
 \newblock Hi-c analysis in arabidopsis identifies the knot, a structure with
   similarities to the flamenco locus of drosophila.
-\newblock Molecular cell 55:678--693.
+\newblock Molecular Cell 55:678--693.
 
 \bibitem[{Guo et~al.(1996)Guo, Davis, and Birchler}]{guo1996}
 Guo, M., D.~Davis, and J.~A. Birchler, 1996.
@@ -134,7 +134,7 @@ Guo, M., D.~Davis, and J.~A. Birchler, 1996.
 Hakes, L., J.~W. Pinney, S.~C. Lovell, S.~G. Oliver, and D.~L. Robertson, 2007.
 \newblock All duplicates are not equal: the difference between small-scale and
   genome duplication.
-\newblock Genome biology 8:R209.
+\newblock Genome Biology 8:R209.
 
 \bibitem[{Hou et~al.(2018)Hou, Shi, Chen, Islam, Johnson, Kanno, Huettel, Yen,
   Hsu, Ji et~al.}]{hou2018}
@@ -149,7 +149,7 @@ Katju, V. and U.~Bergthorsson, 2018.
 \newblock Old trade, new tricks: insights into the spontaneous mutation process
   from the partnering of classical mutation accumulation experiments with
   high-throughput genomic approaches.
-\newblock Genome biology and evolution 11:136--165.
+\newblock Genome Biology and Evolution 11:136--165.
 
 \bibitem[{Konrad et~al.(2018)Konrad, Flibotte, Taylor, Waterston, Moerman,
   Bergthorsson, and Katju}]{konrad2018}
@@ -176,7 +176,7 @@ Liu, C., Y.-J. Cheng, J.-W. Wang, and D.~Weigel, 2017.
 Love, M.~I., W.~Huber, and S.~Anders, 2014.
 \newblock Moderated estimation of fold change and dispersion for rna-seq data
   with deseq2.
-\newblock Genome biology 15:550.
+\newblock Genome Biology 15:550.
 
 \bibitem[{Lynch and Conery(2000)}]{lynch2000}
 Lynch, M. and J.~S. Conery, 2000.
@@ -191,7 +191,7 @@ Lynch, M. and J.~S. Conery, 2000.
 \bibitem[{Panchy et~al.(2016)Panchy, Lehti-Shiu, and Shiu}]{panchy2016}
 Panchy, N., M.~Lehti-Shiu, and S.-H. Shiu, 2016.
 \newblock Evolution of gene duplication in plants.
-\newblock Plant physiology 171:2294--2316.
+\newblock Plant Physiology 171:2294--2316.
 
 \bibitem[{Papp et~al.(2003)Papp, Pal, and Hurst}]{papp2003}
 Papp, B., C.~Pal, and L.~D. Hurst, 2003.
@@ -203,7 +203,7 @@ Papp, B., C.~Pal, and L.~D. Hurst, 2003.
 Pertea, M., D.~Kim, G.~M. Pertea, J.~T. Leek, and S.~L. Salzberg, 2016.
 \newblock Transcript-level expression analysis of rna-seq experiments with
   hisat, stringtie and ballgown.
-\newblock Nature protocols 11:1650.
+\newblock Nature Protocols 11:1650.
 
 \bibitem[{Pirrello et~al.(2018)Pirrello, Deluche, Frangne, Gevaudant, Maza,
   Djari, Bourge, Renaudin, Brown, Bowler et~al.}]{pirrello2018}
@@ -225,7 +225,7 @@ Qiao, X., H.~Yin, L.~Li, R.~Wang, J.~Wu, J.~Wu, and S.~Zhang, 2018.
 \newblock Different modes of gene duplication show divergent evolutionary
   patterns and contribute differently to the expansion of gene families
   involved in important fruit traits in pear (pyrus bretschneideri).
-\newblock Frontiers in plant science 9:161.
+\newblock Frontiers in Plant Science 9:161.
 
 \bibitem[{Ravi and Chan(2010)}]{ravi2010}
 Ravi, M. and S.~W. Chan, 2010.
@@ -250,21 +250,21 @@ Rodgers-Melnick, E., S.~P. Mane, P.~Dharmawardhana, G.~T. Slavov, O.~R. Crasta,
   S.~H. Strauss, A.~M. Brunner, and S.~P. DiFazio, 2012.
 \newblock Contrasting patterns of evolution following whole genome versus
   tandem duplication events in populus.
-\newblock Genome research 22:95--105.
+\newblock Genome Research 22:95--105.
 
 \bibitem[{Rogers et~al.(2017)Rogers, Shao, and Thornton}]{rogers2017}
 Rogers, R.~L., L.~Shao, and K.~R. Thornton, 2017.
 \newblock Tandem duplications lead to novel expression patterns through exon
   shuffling in drosophila yakuba.
-\newblock PLoS genetics 13:e1006795.
+\newblock PLoS Genetics 13:e1006795.
 
 \bibitem[{Schlapfer et~al.(2017)Schlapfer, Zhang, Wang, Kim, Banf, Chae,
   Dreher, Chavali, Nilo-Poyanco, Bernard et~al.}]{schlapfer2017}
 Schlapfer, P., P.~Zhang, C.~Wang, T.~Kim, M.~Banf, L.~Chae, K.~Dreher, A.~K.
   Chavali, R.~Nilo-Poyanco, T.~Bernard, et~al., 2017.
 \newblock Genome-wide prediction of metabolic enzymes, pathways and gene
   clusters in plants.
-\newblock Plant physiology Pp. pp--01942.
+\newblock Plant Physiology Pp. pp--01942.
 
 \bibitem[{Schnable et~al.(2011)Schnable, Springer, and Freeling}]{schnable2011}
 Schnable, J.~C., N.~M. Springer, and M.~Freeling, 2011.
@@ -277,18 +277,18 @@ Schnable, J.~C., N.~M. Springer, and M.~Freeling, 2011.
 Schnable, J.~C., X.~Wang, J.~C. Pires, and M.~Freeling, 2012.
 \newblock Escape from preferential retention following repeated whole genome
   duplications in plants.
-\newblock Frontiers in plant science 3:94.
+\newblock Frontiers in Plant Science 3:94.
 
 \bibitem[{Spoelhof et~al.(2017)Spoelhof, Soltis, and Soltis}]{spoelhof2017}
 Spoelhof, J.~P., P.~S. Soltis, and D.~E. Soltis, 2017.
 \newblock Pure polyploidy: closing the gaps in autopolyploid research.
-\newblock Journal of systematics and evolution 55:340--352.
+\newblock Journal of Systematics and Evolution 55:340--352.
 
 \bibitem[{Springer et~al.(2010)Springer, Weissman, and
   Kirschner}]{springer2010}
 Springer, M., J.~S. Weissman, and M.~W. Kirschner, 2010.
 \newblock A general lack of compensation for gene dosage in yeast.
-\newblock Molecular systems biology 6:368.
+\newblock Molecular Systems Biology 6:368.
 
 \bibitem[{Stupar et~al.(2007)Stupar, Bhaskar, Yandell, Rensink, Hart, Ouyang,
   Veilleux, Busse, Erhardt, Buell et~al.}]{stupar2007}
@@ -318,29 +318,29 @@ Tasdighian, S., M.~Van~Bel, Z.~Li, Y.~Van~de Peer, L.~Carretero-Paulet, and
 Visger, C.~J., G.~K.-S. Wong, Y.~Zhang, P.~S. Soltis, and D.~E. Soltis, 2019.
 \newblock Divergent gene expression levels between diploid and autotetraploid
   tolmiea relative to the total transcriptome, the cell, and biomass.
-\newblock American journal of botany 106:280--291.
+\newblock American Journal of Botany 106:280--291.
 
 \bibitem[{Wang et~al.(2015)Wang, Liu, Roqueiro, Grimm, Schwab, Becker, Lanz,
   and Weigel}]{wang2015}
 Wang, C., C.~Liu, D.~Roqueiro, D.~Grimm, R.~Schwab, C.~Becker, C.~Lanz, and
   D.~Weigel, 2015.
 \newblock Genome-wide analysis of local chromatin packing in arabidopsis
   thaliana.
-\newblock Genome research 25:246--256.
+\newblock Genome Research 25:246--256.
 
 \bibitem[{Wang et~al.(2013)Wang, Tan, and Paterson}]{wang2013}
 Wang, Y., X.~Tan, and A.~H. Paterson, 2013.
 \newblock Different patterns of gene structure divergence following gene
   duplication in arabidopsis.
-\newblock BMC genomics 14:652.
+\newblock BMC Genomics 14:652.
 
 \bibitem[{Wang et~al.(2011)Wang, Wang, Tang, Tan, Ficklin, Feltus, and
   Paterson}]{wang2011}
 Wang, Y., X.~Wang, H.~Tang, X.~Tan, S.~P. Ficklin, F.~A. Feltus, and A.~H.
   Paterson, 2011.
 \newblock Modes of gene duplication contribute differently to genetic novelty
   and redundancy, but show parallels across divergent angiosperms.
-\newblock PloS one 6:e28150.
+\newblock PloS One 6:e28150.
 
 \bibitem[{Xie et~al.(2019)Xie, Zhang, Zhang, Wang, Hu, and Wu}]{xie2019}
 Xie, T., F.-G. Zhang, H.-Y. Zhang, X.-T. Wang, J.-H. Hu, and X.-M. Wu, 2019.