updated requirements and readme

README.md

@@ -47,6 +47,17 @@ Next, install the required packages listed in the `requirements.txt` file:
 
 ``` pip install -r requirements.txt ```
 
+The tensorflow packages are not part of the requirements file because you may want to toggle the CPU and GPU version. For the GPU version type
+
+``` pip install tensorflow-gpu==1.13```
+
+If you want to use the CPU version use the following command. 
+
+``` pip install tensorflow==1.13```
+
+If you want to go back and forth between GPU and CPU it probably makes sense to make two separate environments which are identical except
+for the tensorflow version. 
+
 ## Download the ACDC challenge data
 
 If you don't have access to the data already you can sign up and download it from this [webpage](http://acdc.creatis.insa-lyon.fr/#challenges).

config/system.py

@@ -13,7 +13,7 @@
 # when it is executed on one of the clusters.
 
 at_biwi = True  # Are you running this code from the ETH Computer Vision Lab (Biwi)?
-project_root = '/scratch_net/bmicdl03/code/python/acdc_segmenter_public'
+project_root = '/scratch_net/bmicdl03/code/python/acdc_test'
 data_root = '/scratch_net/bmicdl03/data/ACDC_challenge_20170617/'
 test_data_root = '/scratch_net/bmicdl03/data/ACDC_challenge_testdata/'
 local_hostnames = ['bmicdl03']  # used to check if on cluster or not,

requirements.txt

@@ -30,8 +30,6 @@ scipy==1.2.1
 seaborn==0.9.0
 SimpleITK==1.2.0
 six==1.12.0
-tensorboard==1.12.2
-tensorflow-gpu==1.13.0-rc2
 termcolor==1.1.0
 toolz==0.9.0
 Werkzeug==0.14.1