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hdWGCNA Public
Forked from smorabit/hdWGCNAHigh dimensional weighted gene co-expression network analysis
R Other UpdatedNov 20, 2024 -
gatk Public
Forked from broadinstitute/gatkOfficial code repository for GATK versions 4 and up
Java Other UpdatedNov 13, 2024 -
Sniffles Public
Forked from fritzsedlazeck/SnifflesStructural variation caller using third generation sequencing
Python Other UpdatedNov 10, 2024 -
scMetabolism Public
Forked from wu-yc/scMetabolismQuantifying metabolism activity at the single-cell resolution
R BSD 3-Clause "New" or "Revised" License UpdatedFeb 8, 2024 -
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conga Public
Forked from phbradley/congaClonotype Neighbor Graph Analysis
Jupyter Notebook MIT License UpdatedJan 20, 2024 -
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scGate Public
Forked from carmonalab/scGatemarker-based purification of cell types from single-cell RNA-seq datasets
R UpdatedNov 9, 2023 -
htsjdk Public
Forked from samtools/htsjdkA Java API for high-throughput sequencing data (HTS) formats.
Java UpdatedOct 3, 2023 -
demuxEM Public
Forked from lilab-bcb/demuxEMDemultiplexing cell/nucleus hashing data for single-cell genomics
Python BSD 3-Clause "New" or "Revised" License UpdatedAug 14, 2023 -
server Public
Forked from LabKey/serverTop-level classes and configuration files for LabKey Server.
Java UpdatedApr 30, 2023 -
platform Public
Forked from LabKey/platformA set of modules that provide core functionality for LabKey Server
JavaScript UpdatedApr 14, 2023 -
testAutomation Public
Forked from LabKey/testAutomationLabKey Server testing infrastructure and helpers
Java UpdatedApr 11, 2023 -
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TITAN Public
Forked from ohsu-cedar-comp-hub/TITANAlex Chitsazan's package TITAN for scRNA-seq (Topic Inference of Transcriptionally Associated Networks), an unsupervised Bayesian topic modelling based approach utilizing Latent Dirichlet Allocatio…
R GNU General Public License v3.0 UpdatedJan 26, 2023 -
pegasusio Public
Forked from lilab-bcb/pegasusiopegasus io module for reading/writing single-cell genomics data
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 1, 2023 -
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seurat-disk Public
Forked from mojaveazure/seurat-diskInterfaces for HDF5-based Single Cell File Formats
R GNU General Public License v3.0 UpdatedApr 23, 2022 -
VISION Public
Forked from YosefLab/VISIONSignature Analysis and Visualization for Single-Cell RNA-seq
R MIT License UpdatedMar 1, 2022 -
jbrowse-components Public
Forked from GMOD/jbrowse-componentsMonorepo with JBrowse 2 web, JBrowse 2 desktop, the JB core package, core plugins, and more.
TypeScript Apache License 2.0 UpdatedJan 19, 2022 -
seurat-data Public
Forked from satijalab/seurat-dataDataset distribution for Seurat
R GNU General Public License v3.0 UpdatedDec 27, 2021 -
onprcEHRModules Public
Forked from LabKey/onprcEHRModulesLabKey Server modules used by the Oregon National Primate Research Center for their primate EHR and other functionality
Java UpdatedNov 9, 2021 -
library-imgt Public
Forked from repseqio/library-imgtIMGT segment library converted to RepSeq.IO JSON format
Shell UpdatedNov 5, 2021 -
remotes Public
Forked from r-lib/remotesInstall R packages from GitHub, GitLab, Bitbucket, git, svn repositories, URLs
R Other UpdatedSep 13, 2021 -
labkey-api-js Public
Forked from LabKey/labkey-api-jsJavaScript client API for LabKey Server
TypeScript Other UpdatedAug 13, 2021 -
jbrowse-plugin-gdc Public
Forked from GMOD/jbrowse-plugin-gdcJBrowse 2 plugin for integrating with GDC resources
JavaScript UpdatedJun 8, 2021 -
seurat Public
Forked from satijalab/seuratR toolkit for single cell genomics
R GNU General Public License v3.0 UpdatedMay 29, 2021 -
shiny-testing-gha-example Public template
Forked from rstudio/shiny-testing-gha-exampleExample testing Shiny application with GitHub Actions
R Other UpdatedJul 16, 2020 -
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