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@bcgsc

BC Cancer Canada's Michael Smith Genome Sciences Centre

Sequencing Centre for Genomics and Bioinformatics Research

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  1. RNA-Bloom RNA-Bloom Public

    🌺 reference-free transcriptome assembly for short and long reads

    Java 103 7

  2. LongStitch LongStitch Public

    Correct and scaffold assemblies using long reads

    Makefile 51 7

  3. ntRoot ntRoot Public

    🌳 Human ancestry inference from genomic data

    Python 6

  4. btllib btllib Public

    Bioinformatics Technology Lab common code library

    C++ 25 6

  5. ntEdit ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    C++ 68 9

  6. goldrush goldrush Public

    Linear-time de novo Long Read Assembler

    C++ 39 2

Repositories

Showing 10 of 117 repositories
  • pori_ipr_client Public

    Integrated Pipeline Reports (IPR) client. The web interface for the reporting application as part of PORI

    bcgsc/pori_ipr_client’s past year of commit activity
    TypeScript 8 GPL-3.0 1 0 8 Updated Apr 2, 2025
  • pori_graphkb_loader Public

    The Loaders for GraphKB. Imports content from external sources via the GraphKB REST API

    bcgsc/pori_graphkb_loader’s past year of commit activity
    JavaScript 6 GPL-3.0 4 12 3 Updated Apr 2, 2025
  • pori_python Public
    bcgsc/pori_python’s past year of commit activity
    Python 0 GPL-3.0 2 1 2 Updated Apr 2, 2025
  • pori_graphkb_api Public

    REST API for the GraphKB project

    bcgsc/pori_graphkb_api’s past year of commit activity
    JavaScript 4 GPL-3.0 1 6 1 Updated Apr 1, 2025
  • LINKS Public

    ⛓ Long Interval Nucleotide K-mer Scaffolder

    bcgsc/LINKS’s past year of commit activity
    Perl 74 GPL-3.0 16 0 0 Updated Apr 1, 2025
  • btl Public

    🔬 Bioinformatics Technology Lab, Genome Sciences Centre

    bcgsc/btl’s past year of commit activity
    HTML 1 3 4 0 Updated Mar 27, 2025
  • abyss Public

    🔬 Assemble large genomes using short reads

    bcgsc/abyss’s past year of commit activity
    C++ 317 110 5 1 Updated Mar 27, 2025
  • HLAminer Public

    ⛏ HLA predictions from NGS shotgun data

    bcgsc/HLAminer’s past year of commit activity
    Perl 52 15 0 0 Updated Mar 27, 2025
  • ntRoot Public

    🌳 Human ancestry inference from genomic data

    bcgsc/ntRoot’s past year of commit activity
    Python 6 GPL-3.0 0 0 0 Updated Mar 27, 2025
  • pori_ipr_api Public

    Integrated Pipeline Reports (IPR) API, the reporting API as part of the PORI platform

    bcgsc/pori_ipr_api’s past year of commit activity
    JavaScript 8 0 0 8 Updated Mar 27, 2025
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