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Commits on Jan 29, 2025

• prepare for release 1.2.2 (#151)

  jwcodee

  authored
  2ebcfea

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Commits on Jan 24, 2025

• Ensures miBf is deterministic (#150)

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  jwcodee

  authored
  575078e

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Commits on Dec 2, 2024

• User QoL and refactor (#148)

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  jwcodee

  and

  jowong04

  authored
  10c51ee

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Commits on Dec 1, 2024

• Properly Calculate Phred average in GoldRush (#144)

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  5 peopleauthored
  4246de5

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Commits on Nov 1, 2024

• Pin minimap2 version in linux CI (#147)

  lcoombe

  authored
  ab33521

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• Prepare for release v1.2.1 (#146)

  lcoombe

  authored
  e9a5cdc

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• Add G to ntLink_rounds command to avoid parameter name collision (#145)

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  lcoombe

  authored
  0820f0a

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Commits on Oct 3, 2024

• prep for release 1.2.0 (#143)

  jwcodee

  authored
  eaa43c1

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Commits on Oct 1, 2024

• minor bug fixes before goldrush release (#142)

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  emilyyzhangg

  authored
  c4ba3bb

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Commits on Sep 27, 2024

• Merge pull request #141 from bcgsc/gp_target_integration

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  emilyyzhangg

  authored
  b1ecd39

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• Reformatting help page again

  emilyyzhangg

  committed
  a1f9ad6

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• Reformatting tabs in help page

  emilyyzhangg

  committed
  ede6d00

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• Reformatting tabs in help page again

  emilyyzhangg

  committed
  759def6

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• Reformatting help page

  emilyyzhangg

  committed
  a79960d

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• changing name of gp-target pipeline to shorten it a bit

  emilyyzhangg

  committed
  60dae81

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Commits on Sep 26, 2024

• updating README and help

  emilyyzhangg

  committed
  055bcf0

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• Pinning older yml version to fix failing CI tests

  emilyyzhangg

  committed
  97eff23

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• new goldpolish submodule update to fix CI bugs

  emilyyzhangg

  committed
  31f7d48

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• Now I think I updated it?

  emilyyzhangg

  committed
  cb4c7cb

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• Maybe updated submodule?

  emilyyzhangg

  committed
  6707e72

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• modifying gp-target command to include long reads

  emilyyzhangg

  committed
  695adb7

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Commits on Sep 24, 2024

• New branch so that goldpolish submodule is up-to-date

  emilyyzhangg

  committed
  1612e4b

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• added goldpolish-target rule

  emilyyzhangg

  committed
  dc8ba61

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Commits on Sep 13, 2024

• Update goldpolish (#139)

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  lcoombe

  authored
  982ff47

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Commits on Jun 17, 2024

• prep v1.1.2 for release (#137)

  jwcodee

  authored
  aeececd

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• goldrush-path: ensure reads only have atcg (#136)

  jwcodee

  authored
  eb9e28f

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Commits on May 7, 2024

• goldrush-path: add tiles and queries logs (#134)

  jwcodee

  authored
  9117e09

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Commits on Apr 3, 2024

• prep v1.1.1 for release (#133)

  jwcodee

  authored
  bea4c76

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Commits on Apr 2, 2024

• gr-path: add log for number of valid reads visited when making a silver path (#132)

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  jwcodee

  and

  lcoombe

  authored
  7b92795

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Commits on Mar 28, 2024

• Log info and seed design improvement (#131)

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  jwcodee

  and

  lcoombe

  authored
  a5a1f7f

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Commits on Feb 1, 2024

• Add note about read order to goldrush makefile and README.md (#130)

  lcoombe

  authored
  12ab32b

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Commits on Jan 26, 2024

• add verbose and debug flag to goldrush path (#129)

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  jwcodee

  authored
  d56b08c

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Commits on Oct 12, 2023

• Run GR in subdir and softlink output of each stage to top dir (#127)

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  jwcodee

  and

  jowong04

  authored
  cb4e715

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Commits on Sep 21, 2023

• Prepare for release v1.1.0 (#126)

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  jwcodee

  authored
  4493b05

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Commits on Sep 18, 2023

• Rename instances of GoldRush-Edit to GoldPolish (#125)

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  jwcodee

  and

  lcoombe

  authored
  8bbcd4c

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