DeepSpeed is a deep learning optimization library that makes distributed training and inference easy, efficient, and effective.

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Code for running RFdiffusion

A new approach to obtaining local copies of ensembl data

Programming language for literate programming law specification

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

RNA-seq aligner

Differential expression of RNA-seq data using the Negative Binomial

A Java API for high-throughput sequencing data (HTS) formats.

Tools (written in C using htslib) for manipulating next-generation sequencing data

Layer definitions for nswtopo

A vector topographic mapping tool, with layers available for NSW and Tasmania. Pre-built maps also available:

The Aristotle App Framework

Haxophone, an electronic musical instrument that resembles a saxophone

Tools for analysis of sequence divergence

This repository contains the codebase that runs the webservice to benchmark orthology predictions on a common reference proteome dataset.

commandline asciii kanban board for minimalist productivity hackers & managers (csv-based) #scriptable #nestable #statistics #singlefile #shellscript #issuetracker #git

MGnify genome analysis pipeline

machine learning for genomic variants

Reference Phylogeny for Bacterial and Archaeal Genomes

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

The MetaGeneMark-2 source code, data, and experiments to reproduce published results.

This repo contains the code for the undertaking of the biol3209 subject.

Package for visualizing brain networks. Creates chord diagrams drawn using matplotlib

Papers from the computer science community to read and discuss.