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add proper image (scverse#1231)
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falexwolf authored May 18, 2020
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14 changes: 6 additions & 8 deletions docs/tutorials.rst
Original file line number Diff line number Diff line change
Expand Up @@ -63,8 +63,8 @@ Spatial data
* Basic analysis of spatial data: :tutorial:`spatial/basic-analysis`
* Integrating spatial data with scRNA-seq using scanorama: :tutorial:`spatial/integration-scanorama`

.. image:: https://scanpy-tutorials.readthedocs.io/en/latest/_images/spatial_integration-scanorama_23_0.png
:width: 350px
.. image:: _static/img/spatial-basic-analysis.png
:width: 250px


Further Tutorials
Expand Down Expand Up @@ -92,13 +92,14 @@ See the `cell cycle`_ notebook.

.. _cell cycle: https://nbviewer.jupyter.org/github/theislab/scanpy_usage/blob/master/180209_cell_cycle/cell_cycle.ipynb

Scaling Computations
~~~~~~~~~~~~~~~~~~~~

.. image:: http://falexwolf.de/img/scanpy_usage/170522_visualizing_one_million_cells/tsne_1.3M.png
:width: 120px
:align: right


Scaling Computations
~~~~~~~~~~~~~~~~~~~~

* Visualize and cluster `1.3M neurons`_ from 10x Genomics.

.. _1.3M neurons: https://github.com/theislab/scanpy_usage/tree/master/170522_visualizing_one_million_cells
Expand All @@ -111,9 +112,6 @@ Simulating single cells using literature-curated gene regulatory networks [Wittm
.. image:: http://falexwolf.de/img/scanpy_usage/170430_krumsiek11/timeseries.png
:width: 200px
:align: right
.. image:: http://falexwolf.de/img/scanpy_usage/170430_krumsiek11/draw_graph.png
:width: 100px
:align: right

* Notebook for `myeloid differentiation`_
* Notebook for simple toggleswitch_
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