Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber

A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which…

Official repository for the QIIME 2 framework.

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

Clustering cONtigs with COverage and ComposiTion

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Ultra-fast and memory-efficient (meta-)genome assembler

SPAdes Genome Assembler

NCBI Prokaryotic Genome Annotation Pipeline

DDBJ Fast Annotation and Submission Tool

⚡ ♒ Rapid prokaryotic genome annotation

🚀✨ Help beginners to contribute to open source projects

A quality control analysis tool for high throughput sequencing data

Estimate metagenomic coverage and sequence diversity

MeTaxa: an advanced taxonomy classifier for unknown genomic and metagenomic sequences

Code for modelling estimated deaths and cases for COVID19.

Detecting and quantifying functional genes in short-read metagenomic datasets

OPAL: Open-community Profiling Assessment tooL

AMBER: Assessment of Metagenome BinnERs

Genome assembly evaluation tool