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Add a concatenation option to the mergePairs function. #40

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merged 1 commit into from
Sep 25, 2015

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zachcp
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@zachcp zachcp commented Sep 25, 2015

Hi Team Dada,

I think this is a minimal concatenation script that should work. All it does is check for the concat flag and paste the sequences together (reverseComplementing the Reverse read). I set the up slots (match, nmatch, nmismatch, nindel) to something I think are reasonable but I am not 100% sure how they might be used downstream.

zach cp

@benjjneb benjjneb merged commit 73fabe3 into benjjneb:master Sep 25, 2015
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Thanks for the addition, it is merged in.

@zachcp zachcp deleted the fastconcat2 branch September 28, 2015 14:45
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2 participants