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Commits on Feb 14, 2020

• Print addiitonal diagnostic info when running

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Commits on Feb 12, 2020

• Added a test profile for pipeline testing

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• Cleanup 2: cleanup old code

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• Updated container links, remove singularity no-home

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Commits on Jan 29, 2020

• Changed singularity --contain to --no-home

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Commits on Jan 28, 2020

• Added singularity contain option in nextflow.config

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Commits on Sep 25, 2019

• Updated nextflow and installation docs to use pySCENIC 0.9.18

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Commits on Sep 19, 2019

• Updated documentation for installation and container usage with Jupyter

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Commits on Jul 30, 2019

• Updated the nextflow and readme to reflect the use of pySCENIC 0.9.15

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Commits on Jul 24, 2019

• Updated container system to use one unified container

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Commits on May 20, 2019

• Initial steps for integrating output.

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Commits on May 17, 2019

• Updated Scanpy tag to point to 1.4.1.

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Commits on May 13, 2019

• Updated pySCENIC container tag to version 0.9.9.

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• Fixed boolean quotes. Clean up singularity hub image redirects for

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Commits on Apr 25, 2019

• Added SCENIC steps into the main workflow. Added formatting step for the

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• Initial commit with filtering plus canonical preprocessing,

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