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BigBio Stack

Provide big data solutions Bioinformatics

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  1. proteomics-sample-metadata proteomics-sample-metadata Public

    The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets

    79 107

  2. quantms quantms Public

    Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

    Nextflow 34 37

Repositories

Showing 10 of 47 repositories
  • multiomics-configs Public

    Set of config files for species, taxonomies, etc

    bigbio/multiomics-configs’s past year of commit activity
    Shell 2 0 77 (1 issue needs help) 0 Updated Dec 24, 2024
  • quantms Public

    Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

    bigbio/quantms’s past year of commit activity
    Nextflow 34 MIT 37 67 (3 issues need help) 0 Updated Dec 23, 2024
  • quantms-rescoring Public

    quantms and ms2rescore helper functions and scripts

    bigbio/quantms-rescoring’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Dec 22, 2024
  • quantms-utils Public

    A python library with scripts and helpers classes for quantms workflow

    bigbio/quantms-utils’s past year of commit activity
    Python 5 MIT 1 0 0 Updated Dec 20, 2024
  • sdrf-cellline-metadata-db Public

    SDRF Cell Line Metadata Database

    bigbio/sdrf-cellline-metadata-db’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Dec 20, 2024
  • ibaqpy Public

    Absolute quantification package based on quantms.io

    bigbio/ibaqpy’s past year of commit activity
    Python 11 MIT 9 8 (2 issues need help) 0 Updated Dec 19, 2024
  • quantms.io Public

    The proteomics quantification format, extending mzTab for large scale datasets.

    bigbio/quantms.io’s past year of commit activity
    Python 7 4 18 (1 issue needs help) 0 Updated Dec 19, 2024
  • sdrf-utils Public

    sdrf-cls

    bigbio/sdrf-utils’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Dec 18, 2024
  • diann-docker Public

    DIANN docker container based on the linux version from DIANN

    bigbio/diann-docker’s past year of commit activity
    Dockerfile 0 Apache-2.0 0 0 0 Updated Nov 21, 2024
  • spectrafuse Public

    Incremental clustesting pipeline from quantms data.

    bigbio/spectrafuse’s past year of commit activity
    Python 1 MIT 0 4 (2 issues need help) 0 Updated Nov 18, 2024
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