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the current tide workflow mzidentml is not valid #12

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ypriverol opened this issue Feb 1, 2019 · 2 comments
Open
1 of 3 tasks

the current tide workflow mzidentml is not valid #12

ypriverol opened this issue Feb 1, 2019 · 2 comments
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@ypriverol
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@ypriverol
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ypriverol commented Feb 1, 2019 •
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We need to solve the issue with the mzIdentML production that is not valid.

  • First option: I will contact the developers to see if they are willing to make them happen.
  • Second Option: Export to PepXML and develop a reader of PepXML in PIA.
  • Third Option: Use the txt file in the pipeline and extend PIA.
@ypriverol ypriverol self-assigned this Feb 1, 2019
@ypriverol ypriverol added the bug Something isn't working label Feb 1, 2019
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The export using txt works but PIA has some wrong behaviour . Im fixing now the bugs.

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I have removed for now the mzidentml export and use the txt file output that works perfectly well. I have created an issue in tide repo to address the mzidentml issues. check here: crux-toolkit/crux-toolkit#423 . We should close this issue only when everything with the mzidentml is fine.

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