Remove no longer needed functions for creating biobox file

biobox_cli/biobox_file.py

@@ -8,19 +8,3 @@ def generate(args):
 def get_biobox_file_contents(dir_):
     with open(os.path.join(dir_, 'biobox.yaml'), 'r') as f:
         return yaml.load(f.read())
-
-def fastq_arguments(args):
-    return files_values("fastq", args)
-
-def fasta_arguments(args):
-    return files_values("fasta", args)
-
-def reference_argument(ref):
-    return {"fasta_dir": [{"id" : 1, "type" : "reference", "value" : ref}]}
-
-def files_values(identifier, args):
-    values = [entry(identifier + "_" + str(i), p_c, t) for (i, (p_c, t)) in enumerate(args)]
-    return {identifier : values}
-
-def entry(id_, value, type_):
-    return {"id" : id_, "value" : value, "type" : type_}

test/test_biobox_file.py

@@ -12,9 +12,3 @@ def test_generate_biobox_file():
 version: 0.9.0
 """
     assert expected == output
-
-def test_fastq_arguments_with_single_arg():
-    fastq_values = [("/fastq/input.fq", "paired")]
-    expected = {"fastq" :
-      [{"id" : "fastq_0", "type": "paired", "value" : "/fastq/input.fq"}]}
-    assert bbf.fastq_arguments(fastq_values) == expected