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@bioinfo-biols

Fangqing Zhao's Lab

Genomics & Computational Biology Lab, Beijing Institutes of Life Science

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  1. CIRIquant CIRIquant Public

    circular RNA quantification tools

    Perl 28 17

  2. SEVtras SEVtras Public

    sEV-containing droplet identification in scRNA-seq data (SEVtras)

    Python 20 7

  3. CIRI-long CIRI-long Public

    Circular RNA Identification for Nanopore Sequencing

    Python 18 5

  4. Code_for_circSC Code_for_circSC Public

    Analysis pipeline for our circSC manuscript

    Python 12 4

  5. Flow2Spatial Flow2Spatial Public

    Flow2Spatial reconstructs spatial proteomics through transfer learning.

    Python 6

  6. CIRI-cookbook CIRI-cookbook Public

    Document for CIRI-series software

    Python 5 1

Repositories

Showing 10 of 14 repositories
  • RidgeSpace Public

    Unravelling three-dimensionally dynamics of spatial multi-modal data

    bioinfo-biols/RidgeSpace’s past year of commit activity
    Jupyter Notebook 5 GPL-3.0 0 0 0 Updated Dec 12, 2024
  • SEVtras Public

    sEV-containing droplet identification in scRNA-seq data (SEVtras)

    bioinfo-biols/SEVtras’s past year of commit activity
    Python 20 AGPL-3.0 7 22 0 Updated Nov 5, 2024
  • MAGIC-seq Public
    bioinfo-biols/MAGIC-seq’s past year of commit activity
    Jupyter Notebook 2 1 1 0 Updated Oct 17, 2024
  • PROFIT-seq Public

    Programmable Full-length Transcriptome Sequencing

    bioinfo-biols/PROFIT-seq’s past year of commit activity
    CSS 3 MIT 0 0 0 Updated Jul 9, 2024
  • CIRIquant Public

    circular RNA quantification tools

    bioinfo-biols/CIRIquant’s past year of commit activity
    Perl 28 MIT 17 29 2 Updated Jun 17, 2024
  • CIRI-long Public

    Circular RNA Identification for Nanopore Sequencing

    bioinfo-biols/CIRI-long’s past year of commit activity
    Python 18 MIT 5 11 0 Updated May 23, 2024
  • CIRI-full Public

    Full length circRNA reconstruction and quantification using BSJ and reverse overlap (RO) features.

    bioinfo-biols/CIRI-full’s past year of commit activity
    Perl 3 3 2 0 Updated Mar 15, 2024
  • Supplementary_materials_CiliateSymbiont_2024 Public
    bioinfo-biols/Supplementary_materials_CiliateSymbiont_2024’s past year of commit activity
    0 0 0 0 Updated Mar 9, 2024
  • Flow2Spatial Public

    Flow2Spatial reconstructs spatial proteomics through transfer learning.

    bioinfo-biols/Flow2Spatial’s past year of commit activity
    Python 6 GPL-3.0 0 0 0 Updated Dec 9, 2023
  • CIRI-cookbook Public

    Document for CIRI-series software

    bioinfo-biols/CIRI-cookbook’s past year of commit activity
    Python 5 1 20 0 Updated Nov 30, 2023
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