These tools have been compiled in the msys2 environment on a Windows 7 machine (64-bit). Likely they will require msys2 to be installed!
For your convenience I've also added various dlls from the msys2 environment (specifically, dlls that are required by these programs). Portability needs to be tested on all of this...
In particular, the following are available:
- bgzip [http://www.htslib.org/doc/bgzip.html]
- samtools [http://samtools.sourceforge.net/]
- bwa [http://bio-bwa.sourceforge.net/]
- tabix [https://github.com/samtools/tabix]
- bcftools [http://www.htslib.org/doc/bcftools-1.0.html]
- seqtools [https://github.com/walaj/SeqLib] (note that the SeqLib library also appears to work just fine on Windows as well.)