An AI-powered research assistant that performs iterative, deep research on any topic by combining search engines, web scraping, and large language models. The goal of this repo is to provide the si…

Code for the ProteinMPNN paper

User friendly and accurate binder design pipeline

User-friendly AI Interface (Supports Ollama, OpenAI API, ...)

Official repository for the Boltz-1 biomolecular interaction model

Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling

Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/

Weaviate is an open-source vector database that stores both objects and vectors, allowing for the combination of vector search with structured filtering with the fault tolerance and scalability of …

an admixture analysis tool for Python that supports raw data from 23andme, AncestryDNA, etc.

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

Code, 3D Print Files, BOM and Build Instructions for the DIYNAFLUOR DNA Fluorometer

A Lightweight Recommendation System

SEAL 911 is a project designed to give users, developers, and security researchers an accessible way to connect with a small group of highly trusted security professionals in case of emergency.

CAMISIM: Simulating metagenomes and microbial communities

Autonomous agents for everyone

AutoRAG: An Open-Source Framework for Retrieval-Augmented Generation (RAG) Evaluation & Optimization with AutoML-Style Automation

Nanopore sequence read simulator

A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides and the potential immunogenicity of pMHC

Code from the "CUDA Crash Course" YouTube series by CoffeeBeforeArch

Protein language model customized for antibodies

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Ultra-fast preprocessing and quality control for long-read sequencing data

A python chat bot with basic Vector Database Memory functionality

A generative model for programmable protein design