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  1. IGV-snapshot-automator IGV-snapshot-automator Public

    Forked from stevekm/IGV-snapshot-automator

    Script to automatically create and run IGV snapshot batchscripts

    Python

  2. igv-reports igv-reports Public

    Forked from igvteam/igv-reports

    Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

    Python

  3. DNABERT DNABERT Public

    Forked from jerryji1993/DNABERT

    DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

    Python

  4. DNABERT_2 DNABERT_2 Public

    Forked from MAGICS-LAB/DNABERT_2

    [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

    Shell

  5. ABC-Enhancer-Gene-Prediction ABC-Enhancer-Gene-Prediction Public

    Forked from broadinstitute/ABC-Enhancer-Gene-Prediction

    Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

    Python

  6. SISSIz SISSIz Public

    Forked from ViennaRNA/SISSIz

    SISSIz: Dinucleotide controlled random alignments and RNA gene prediction

    C

Repositories

Showing 7 of 7 repositories
  • ABC-Enhancer-Gene-Prediction Public Forked from broadinstitute/ABC-Enhancer-Gene-Prediction

    Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

    boab2/ABC-Enhancer-Gene-Prediction’s past year of commit activity
    Python 0 MIT 64 0 0 Updated Sep 5, 2024
  • DNABERT_2 Public Forked from MAGICS-LAB/DNABERT_2

    [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

    boab2/DNABERT_2’s past year of commit activity
    Shell 0 Apache-2.0 73 0 0 Updated Apr 2, 2024
  • igv-reports Public Forked from igvteam/igv-reports

    Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

    boab2/igv-reports’s past year of commit activity
    Python 0 MIT 55 0 0 Updated Mar 15, 2024
  • DNABERT Public Forked from jerryji1993/DNABERT

    DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

    boab2/DNABERT’s past year of commit activity
    Python 0 Apache-2.0 163 0 0 Updated Mar 9, 2024
  • ENCODE_CRISPR_data Public Forked from argschwind/ENCODE_CRISPR_data

    Re-analyze and harmonize Gasperini et al., 2019, Schraivogel et al., 2020 and Nasser et al., 2021 data for ENCODE distal regulation E-G benchmarking

    boab2/ENCODE_CRISPR_data’s past year of commit activity
    R 0 1 0 0 Updated Feb 28, 2024
  • IGV-snapshot-automator Public Forked from stevekm/IGV-snapshot-automator

    Script to automatically create and run IGV snapshot batchscripts

    boab2/IGV-snapshot-automator’s past year of commit activity
    Python 0 GPL-3.0 50 0 0 Updated Jan 13, 2023
  • SISSIz Public Forked from ViennaRNA/SISSIz

    SISSIz: Dinucleotide controlled random alignments and RNA gene prediction

    boab2/SISSIz’s past year of commit activity
    C 0 3 0 0 Updated Jul 25, 2019

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