A PyTorch library for implementing flow matching algorithms, featuring continuous and discrete flow matching implementations. It includes practical examples for both text and image modalities.

Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset

Automatic atomic model building program for cryo-EM maps

Basic cryo-EM reconstruction functionality in JAX.

Numerical experiments showing artifacts resulting from dimensionality reduction.

The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge

Cookiecutter for napari plugins

Scripts to simulation of Tomograms with the TEM Simulator easy.

cryo-ET particle picking by representation and metric learning

GPU-accelerated template matching for cryo-ET

Scripts to make cryo-electron tomography a bit easier

Implementation of Denoising Diffusion Probabilistic Model in Pytorch

Implementation of Alphafold 3 from Google Deepmind in Pytorch

Official PyTorch Implementation of "Scalable Diffusion Models with Transformers"

Live processing and real time reconstruction of cryo

A standard cryo-ET projection model

Self-supervised learning for isotropic cryoET reconstruction

ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.

Understanding Deep Learning - Simon J.D. Prince

A launch point for your personal nvim configuration

This is a repo with links to everything you'd ever want to learn about data engineering

Leveraging Structural Priors and Constraints for Cryo-EM Heterogeneous Reconstruction

Scripts for acquiring DeCo-LACE data using SerialEM

WebGL accelerated JavaScript molecular graphics library

Machine Learning Engineering Open Book

Reader for EMPIAR datasets