Skip to content
View bogdantoader's full-sized avatar

Organizations

@compSPI @teamtomo

Block or report bogdantoader

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
Showing results

A PyTorch library for implementing flow matching algorithms, featuring continuous and discrete flow matching implementations. It includes practical examples for both text and image modalities.

Python 1,240 48 Updated Dec 15, 2024

Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset

Python 23 7 Updated Dec 10, 2024

Automatic atomic model building program for cryo-EM maps

Python 128 19 Updated Oct 30, 2024

Basic cryo-EM reconstruction functionality in JAX.

Jupyter Notebook 1 Updated Nov 11, 2024

Numerical experiments showing artifacts resulting from dimensionality reduction.

Jupyter Notebook 1 Updated Jul 9, 2023

The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge

Jupyter Notebook 6 Updated Dec 12, 2024

Cookiecutter for napari plugins

Python 69 41 Updated Nov 6, 2024

Scripts to simulation of Tomograms with the TEM Simulator easy.

Python 9 2 Updated Nov 28, 2024

cryo-ET particle picking by representation and metric learning

Python 32 6 Updated Oct 2, 2024

GPU-accelerated template matching for cryo-ET

Python 30 9 Updated Nov 20, 2024

Scripts to make cryo-electron tomography a bit easier

Python 11 4 Updated Dec 13, 2024

Implementation of Denoising Diffusion Probabilistic Model in Pytorch

Python 8,551 1,055 Updated Oct 9, 2024

Implementation of Alphafold 3 from Google Deepmind in Pytorch

Python 1,281 155 Updated Dec 3, 2024

Official PyTorch Implementation of "Scalable Diffusion Models with Transformers"

Python 6,540 585 Updated May 31, 2024

Live processing and real time reconstruction of cryo

C++ 18 1 Updated Nov 6, 2024

A standard cryo-ET projection model

9 Updated Apr 19, 2024
C# 42 7 Updated Dec 10, 2024

Self-supervised learning for isotropic cryoET reconstruction

Python 75 13 Updated Nov 8, 2024

ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.

Python 32 4 Updated Oct 21, 2024
Jupyter Notebook 13 1 Updated Nov 11, 2023

Understanding Deep Learning - Simon J.D. Prince

Jupyter Notebook 6,688 1,393 Updated Dec 2, 2024

A launch point for your personal nvim configuration

Lua 20,510 25,341 Updated Dec 15, 2024

This is a repo with links to everything you'd ever want to learn about data engineering

Jupyter Notebook 23,160 3,955 Updated Dec 14, 2024

Leveraging Structural Priors and Constraints for Cryo-EM Heterogeneous Reconstruction

Python 44 1 Updated Nov 4, 2024

Scripts for acquiring DeCo-LACE data using SerialEM

Python 2 Updated Sep 27, 2024

WebGL accelerated JavaScript molecular graphics library

Jupyter Notebook 826 195 Updated Nov 19, 2024

Machine Learning Engineering Open Book

Python 11,991 727 Updated Dec 4, 2024

Reader for EMPIAR datasets

Python 9 4 Updated Jun 28, 2024
Next