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Issues list

"Cuda" counterpart for Apple M1 computers enhancement New feature or improvement
#149 opened Aug 23, 2022 by areyoukidneyme
@sjfleming
25
ValueError: cannot infer dimensions from zero sized index arrays
#323 opened Jan 11, 2024 by OneHitKO
16
Support for pytorch running on Apple silicon processors
#171 opened Dec 1, 2022 by jopeptid
16
Cellbender output contains deprecated probes and probes with off target activity user question User question about a specific dataset
#234 opened Aug 3, 2023 by martina-morchio
@sjfleming
15
TypeError: cannot pickle 'weakref.ReferenceType' object
#296 opened Oct 16, 2023 by lili03080317
13
Use of CellBender for scATACseq data? enhancement New feature or improvement
#167 opened Nov 16, 2022 by JeGrundman v0.3.0
@sjfleming
13
FileNotFoundError: [Errno 2] No such file or directory: 'ckpt.tar.gz.tmp' -> 'ckpt.tar.gz'
#241 opened Aug 11, 2023 by pengxin2019
@sjfleming
12
CellBender ran successfully but no HTML report generated
#337 opened Feb 27, 2024 by wendy0853
10
Failed to generate HTML report: UnicodeDecodeError: 'ascii' codec can't decode byte bug Something isn't working
#273 opened Sep 5, 2023 by asherkhb-ktx
@sjfleming
10
SPLiTseq user question User question about a specific dataset
#226 opened Jul 2, 2023 by ybaeus
@sjfleming
10
Not saving ckpt.tar.gz checkpoint
#371 opened Jul 4, 2024 by IsauraMaria96
9
Working with the 'posterior' output - per documentation. enhancement New feature or improvement user question User question about a specific dataset
#299 opened Oct 23, 2023 by benemead
@sjfleming
9
OOM Killed during batch processing when running cellbender on slurm enhancement New feature or improvement
#251 opened Aug 21, 2023 by ggconnell
@sjfleming
8
negative entries in filtered count matrix? bug Something isn't working
#306 opened Nov 9, 2023 by bobermayer v0.3.1
@sjfleming
7
Unable to create HTML report (Cellbender version 0.3.0)
#278 opened Sep 8, 2023 by TeodoraTockovska
@sjfleming
7
Help with reducing number of cells called user question User question about a specific dataset
#256 opened Aug 23, 2023 by racng
@sjfleming
7
reuse of checkpoint file user question User question about a specific dataset
#266 opened Aug 31, 2023 by qianzhengzong
@sjfleming
6
No cells found when excluding the ADT user question User question about a specific dataset
#223 opened Jun 1, 2023 by aodainic7
6
Report issue saving checkpoint
#386 opened Oct 1, 2024 by acerdenno
5
Could not save checkpoint (python3.7), due to [enforce fail at inline_container.cc:445] . PytorchStreamWriter failed (EDIT not just on docker)
#301 opened Oct 31, 2023 by plijnzaad
5
save checkpoint to a designated directory?
#290 opened Sep 26, 2023 by LiQian-XC
5
Compatibility with 10X Multiome data? user question User question about a specific dataset
#284 opened Sep 18, 2023 by AndiL04
@sjfleming
5
How can i downgrade to CellBender 0.2? user question User question about a specific dataset
#277 opened Sep 8, 2023 by amini-sahand
@sjfleming
5
multiple parallel run - checkpoint file user question User question about a specific dataset
#267 opened Aug 31, 2023 by muntajihad
@sjfleming
5
Windows Problems installing user question User question about a specific dataset
#175 opened Dec 20, 2022 by kaylinker
@sjfleming
5
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