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139 Open 187 Closed
139 Open 187 Closed
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Issues list

Question on replicability across versions
#401 opened Dec 19, 2024 by dmj6288
cellbender on visium data
#400 opened Dec 10, 2024 by aelhossiny
Run cellbender after Cellranger aggr
#398 opened Dec 4, 2024 by SimonE1220
python 3.7 and torch < 0.2.0
#397 opened Dec 3, 2024 by plijnzaad
OutOfMemory error when computing target noise counts per gene
#396 opened Dec 3, 2024 by MattChristmas
CXXABI_1.3.9
#394 opened Nov 14, 2024 by robin-sto
WISH: Please respect CGroups CPU limits for parallelization, or default to single-core processing
#393 opened Nov 14, 2024 by HenrikBengtsson
Inappropriate hard-coded constant const.MAX_TOTAL_DROPLETS_GUESSED for large datasets?
#390 opened Oct 23, 2024 by colobas
Unexpected Increases in nCount and nFeature Post-CellBender Processing
#389 opened Oct 23, 2024 by echovv
simpleaf + cellbender does not seem to function well
#388 opened Oct 21, 2024 by robertzeibich
Report issue saving checkpoint
#386 opened Oct 1, 2024 by acerdenno
5
Report output fails when count matrix has float counts instead of integers
#384 opened Sep 11, 2024 by MNM-TB
webcolors version problem
#383 opened Sep 11, 2024 by nictru
struct.error: 'i' format requires -2147483648 <= number <= 2147483647
#382 opened Sep 4, 2024 by yuanjianwen-gif
Coupling CellBender w/ other preprocessing tools--doublet detection, demultiplexing
#381 opened Sep 3, 2024 by lhoranportelance
2
load_anndata_from_input_and_output: retain_input_metadata input to nowhere
#380 opened Aug 24, 2024 by benemead
2
NM
#379 opened Aug 20, 2024 by ghost
raw h5ad OR filtered h5ad
#378 opened Aug 19, 2024 by elegantmedstu
1
Mismatch between summary for algorithm convergence and learning curve
#377 opened Aug 6, 2024 by KaczorowskiLab
CellBender for .BAM file
#375 opened Jul 24, 2024 by jzheng25
RuntimeError: CUDA driver error: invalid argument - Google Container Registry (GCR)
#374 opened Jul 16, 2024 by AClab-sgarcia
Cellbender on multiplexed chemistries
#373 opened Jul 11, 2024 by LinearParadox
1
Fixed Single cell RNA seq
#372 opened Jul 8, 2024 by archana433
1
Not saving ckpt.tar.gz checkpoint
#371 opened Jul 4, 2024 by IsauraMaria96
9
OOM posterior inference for chimeric sample even using --posterior-batch-size 1
#370 opened Jul 1, 2024 by njbernstein
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