Skip to content

Issues: broadinstitute/infercnv

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

208 Open 378 Closed
208 Open 378 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

how to run in many cells dataset?
#679 opened Nov 30, 2024 by amingson
Duplication and loss signals in the reference cells
#678 opened Oct 17, 2024 by hxj5
Error in step 15
#677 opened Oct 3, 2024 by dipingxian431
1
Error in apply(cnv_means, 2, function(i) which(i == max(i))) : dim(X) must have a positive length Calls: <Anonymous> -> <Anonymous> -> reassignCNV -> reassignCNV -> apply Execution halted
#676 opened Sep 30, 2024 by FuduanPeng
Error in colnames<-(*tmp*, value = cnv_regions) : attempt to set 'colnames' on an object with less than two dimensions Calls: <Anonymous> ... <Anonymous> -> removeCNV -> removeCNV -> colnames<- Execution halted
#675 opened Sep 30, 2024 by FuduanPeng
Using InferCNV for PBMCs
#674 opened Aug 21, 2024 by Urja25
InferCNV on normalized and scaled data
#673 opened Aug 21, 2024 by floriankreten
STEP 18 error
#672 opened Aug 7, 2024 by lifan2022
infercnv heatmap appearance of 'Reference' (non-malignant) cells: opinion required
#671 opened Aug 3, 2024 by jjacob12
Method question ： Bayesian Network Latent Mixture Model
#670 opened Jul 24, 2024 by kane9530
Step 7 computing tumor subclusters via random_trees NEVER FINISH
#668 opened Jul 15, 2024 by mluciarr
Not getting the reference part of the heatmap
#667 opened Jun 13, 2024 by Cristinacondel1
2
Subsetting inferCNV object
#666 opened Jun 7, 2024 by itismeangie
Error in ScaleData(): ! No layer matching pattern 'data' found. Please run NormalizeData and retry Run rlang::last_trace() to see where the error occurred.
#664 opened May 24, 2024 by Noralii
3
CNVs in the reference cells
#663 opened May 7, 2024 by NaCo-Pt
1
Plotting inferCNV heatmap of several samples
#662 opened May 3, 2024 by farhadfaghihi4
6
How to roll back inferCNV to a previous version
#661 opened May 2, 2024 by Ryeeeeeeeeee
Issues with "infercnv::add_to_seurat" function in infercnv analysis
#660 opened Apr 30, 2024 by MinxiaoYang
Error in validate_infercnv_obj(infercnv_obj): Problem detected w/ infercnv_obj and Error: No feature overlap between existing object and new layer data
#659 opened Apr 23, 2024 by Prakrithi-P
inferCNV development and support on hiatus
#658 opened Apr 22, 2024 by brianjohnhaas
2
Section of inferCNV heatmap blacked out
#657 opened Apr 22, 2024 by julie-jch
Is the output "17_HMM_predHMMi6.leiden.hmm_mode-subclusters.pred_cnv_genes.dat" on the cellular level?
#656 opened Apr 21, 2024 by mahadabihie
Separation epithelial cells in normal and tumour cells
#655 opened Apr 17, 2024 by LeaLe88
Impact of Filtering Out Highly Expressing Cells
#654 opened Apr 17, 2024 by seongguheo
Extracting HMM Features for chromosomal arm level
#653 opened Apr 9, 2024 by seongguheo
ProTip! Mix and match filters to narrow down what you’re looking for.