Cross compilation framework to create native packages for the Synology's NAS

Tools (written in C using htslib) for manipulating next-generation sequencing data

Toolkit for processing sequences in FASTA/Q formats

bedtools - the swiss army knife for genome arithmetic

Near-optimal RNA-Seq quantification

BWK awk modified for biological data

Prodigal Gene Prediction Software

A flexible framework for rapid genome analysis and interpretation

Pairwise Sequence Alignment Library

Interval data structure

A tool set for short variant discovery in genetic sequence data.

Simple python bindings to Yann Collet ZSTD compression library

Tool for stripping adaptors and/or merging paired reads with overlap into single reads.

An efficient FASTQ manipulation suite

PAired-eND Assembler for DNA sequences

Global alignment and alignment extension

Yet another k-mer analyzer

A 3'-end adapter contaminant trimmer

📇 Retrieve data in genomic intervals with a Python interface for tabix.

Protein Alignment and Detection Interface

Simple tool to verticalize text delimited files.

HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment

Assembly Likelihood Estimator

Ninja Is Not Just Another OTU Picking Solution

simple and not slow ORF caller

python wrapper to dpryan79's bigwig library using cffi

A high-performance search engine for large-scale genomic interval datasets

AYB2 -- All Your Base version 2. A base caller for the Illumina platform

A versatile and efficient RNA-Seq read counting tool

Modified or extracted from other programs