Code accompanying the book "Machine Learning for Hackers"

R's data.table package extends data.frame:

An interactive graphing library for R

Convert statistical analysis objects from R into tidy format

simple tools for data cleaning in R

Make Complex Heatmaps

🎄Visualization and annotation of phylogenetic trees

cowplot: Streamlined Plot Theme and Plot Annotations for ggplot2

Define fortify and autoplot functions to allow ggplot2 to handle some popular R packages.

Accurate sample inference from amplicon data with single nucleotide resolution

Ridgeline plots in ggplot2

Differential analysis of RNA-Seq

🎯 ChIP peak Annotation, Comparison and Visualization

R data package for annotating/converting Gene IDs

Detailed Visualization of Large Complex Data in R

R package for genomic feature analysis and visualization

Divide and Recombine

Species richness with high diversity

Tools for visualizing genomics data

Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumptions about the data generation process: quantile normalization …

example of shiny plots which react to clicking on points

Multivariate Welch t-test on distances

NVT - an R package for the assessment of RNA-Seq normalization methods