This repository is associated with a bioRxiv preprint describing the MacCoss laboratory's quality control measures for sample preparation, system suitability, and assessing results.

Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities

A graphical user interface for the Modest Feature Finding algorithm (moFF)

A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file

DeMix workflow for peptide identification