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Updates to CeldaCG_PlotResults rmd #48

Updates to CeldaCG_PlotResults rmd

Updates to CeldaCG_PlotResults rmd #48

Workflow file for this run

# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [devel, master]
pull_request:
branches: [devel, master]
name: BioC-check
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- {os: macOS-latest, r: 'release'}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes
steps:
- uses: actions/checkout@v2
- uses: r-lib/actions/setup-pandoc@v2
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true
- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: |
any::rcmdcheck
url::https://cran.r-project.org/src/contrib/Archive/dbplyr/dbplyr_2.3.4.tar.gz
- name: Install XQuartz on macOS
if: runner.os == 'macOS'
run: brew install xquartz --cask
- name: Install fftw3 on macOS
if: runner.os == 'macOS'
run: brew install fftw
- name: Run BiocCheck
run: |
BiocManager::install("BiocCheck")
library(BiocCheck)
BiocCheck::BiocCheck(".",
`quit-with-status` = TRUE,
`no-check-R-ver` = TRUE,
`no-check-bioc-help` = TRUE
)
shell: Rscript {0}