GIFT(Google Imapact Factor Tools) - Chrome/Edge plugin to get the Google Scholar Impact Factor

LynxAligner, is a sequence alignment software developed using Rust and the seed-extend algorithm

pidong's python toolbox

the front-end application of LegoSeq

Manipulating sequencing data is like playing with LEGO bricks.

OncoPrint visualization

A Zsh theme

The interactive graphing library for Python ✨ This project now includes Plotly Express!

A python implementation of the Burrows Wheeler Alignment for DNA sequence matching

Django backend to varapp

A PyTorch Basecaller for Oxford Nanopore Reads

WebAssembly modules for genomics

Framework for building fast genomics web tools with WebAssembly and WebWorkers

A genome browser designed for complex structural variants and long reads.

D3 plugin to make a table out of a list of objects. Includes examples.

My Solution for PrecisionFDA Brain Cancer Predictive Modeling and Biomarker Discovery Challenge

VCF visualization interface

Scripts supporting identification of genomic features affecting survival time in cancer

CaPSSA: A visual evaluation of cancer biomarker genes for patient stratification and survival analysis using mutation and expression data

Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata

Data and code to reproduce the analysis in the CardioBoost manuscript

Repo for corrcoverage package

Practical Deep Learning for Genomic Prediction: A Keras based guide to implement deep learning

Cloud agnostic genomics analysis, scientific computation and storage platform

single-nucleus nanopore reads processing pipeline

Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanopore long read sequencing data.

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

A fully functional Twitter Clone built with Django.

A repository for the lessons and notebooks used for Binder tutorials