The manuscript repository for the Single-cell Pediatric Cancer Atlas (ScPCA)

A repo to curate information for, and projects resulting from the October 2023 Software Impact Hackathon

Create and evaluate exploratory prediction model for phase 1 HNSCC clinical trial.

Most simple webapp to bulk follow bioinformatics accounts on Mastodon.

Clone me to create your Manubot manuscript

Homepage for all happenings in the Way Lab at CU Anschutz

A collaborative review of the emerging literature on diagnostics and treatments related to COVID-19

The website source code for greenelab.com

The manuscript repository for the Open Pediatric Brain Tumor Atlas Project

R package for Medulloblastoma subtype classification

A GitHub action that checks Python code using black, safety and flake8.

client to the cimr-d database for continuous integration and analysis using cimr

tool for continuously integrated meta-resource

An action for automatically labelling issues

FocalScan: Finding altered genes in cancer based on coordinated DNA & RNA change

Demo manuscript using Manubot

Refine.bio harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scientists.

The analysis repository for the Open Pediatric Brain Tumor Atlas Project

Manuscript on XSwap network permutation and hetnet node degrees

Academic (Masters', PhD, Postdoc) advisors with explicitly stated expectations of themselves and their mentees

Automate execution of Jupyter Notebooks from another Notebook.

Ten Simple Rules for Deep Learning in Biology

Manuscript source for the People of the Pacific Symposium on Biocomputing

Deep generative modeling for single-cell transcriptomics

This contains the dataset for comparing scRNA-seq analysis methods

does the magical pdf-to-pdf conversion popular in academic journal submission sites and does it faster than they do

Manuscript describing the Deep Review Collaborative Workflow and Manubot System