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Commits on Feb 4, 2019

• Python 3 support: use six for py2k/py3k dual support

  chapmanb

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Commits on Feb 24, 2014

• Updated to install viral_assembly_pipeline.py. Removed FASTX and SFF tools (no longer used).

  rsanka

  committed
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Commits on Jun 18, 2013

• Added function install_vicvb_cleanall. Function install_vicvb downloads and installs latest tbl2asn.

  rsanka

  committed
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Commits on Jun 17, 2013

• Changed _initialize_env.SCRATCH_DIR to _initialize_env.VIGOR_SCRATCH_DIR to avoid changing /usr/local/scratch (which other programs use). Removed all unused, vigor-cleanup functions.

  rsanka

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Commits on Apr 16, 2013

• Modified install_galaxy_vcr to add sanitize_all_html in [app:main] section of universe_wsgi.ini. Also removed deprecated function _add_tarball.

  

  Ubuntu

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Commits on Apr 15, 2013

• Unforseen debugging for echo, file IO, and sed when running under fabric

  

  Ubuntu

  committed
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• Added wrong file in previous update. This is the right file.

  rsanka

  committed
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• Replaced install_gsc_patches with install_galaxy_vcr. Also change owner of galaxy vcr to galaxy, removing need to change sudoers.

  rsanka

  committed
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Commits on Apr 2, 2013

• apt-get install of libperlio-gzip-perl and liblocal-lib-perl

  

  Ubuntu

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Commits on Mar 29, 2013

• Added install_vicvb.

  

  Ubuntu

  committed
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Commits on Mar 19, 2013

• Renaming install_GSC_patches to install_gsc_patches

  

  Ubuntu

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  Ubuntu

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Commits on Mar 18, 2013

• Corrected syntax errors in sudo commands under install_GSC_patches.

  

  Ubuntu

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Commits on Mar 5, 2013

• Updating vcr.py for latest VIGOR tarball

  rsanka

  committed
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Commits on Feb 13, 2013

• Created install_GSC_patches on vcr.py and modified custom.yaml to accept it.

  

  root

  committed
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Commits on Jan 24, 2013

• Function _enable_galaxy_on_sudo() adds galaxy privilieges on /etc/sudoers

  

  Ubuntu

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Commits on Jan 17, 2013

• Adding argument env to all install functions for compatibility with fabfile.py

  

  Ubuntu

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  Ubuntu

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Commits on Jan 9, 2013

• Pulls vir-assembly-pipeline.sh from amazomaws repo in place of github

  rsanka

  committed
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Commits on Jan 7, 2013

• Updating vcr.py: Installs viral assembly and viral VIGOR

  rsanka

  committed
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Commits on May 4, 2012

• diff switches changed, all pass

  agbiotec

  committed
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Commits on May 3, 2012

• added test and clean methods under JCVI's Viral Cloud Resource in the

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  agbiotec

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Commits on Apr 24, 2012

• VIGOR deployment works on both 32-bit and 64-bit platforms.

  agbiotec

  committed
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Commits on Apr 23, 2012

• Switched CLUSTALW to .deb (i386 or x64). Need to fix parsing of uname

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  agbiotec

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